RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DERL2Q9GZP9 239 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 HDHD2Q9H0R4 259 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ACTL8Q9H568 366 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ELOVL3Q9HB03 270 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 NMRAL1Q9HBL8 299 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 Q9N2K0 584 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 GSN-AS1Q9NRJ2 163 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 PNO1Q9NRX1 252 aaKnown RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 CUTCQ9NTM9 273 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 STOX2Q9P2F5 926 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 NXT1Q9UKK6 140 aaKnown RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 ATG4BQ9Y4P1 393 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 OARD1Q9Y530 152 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 KLF2Q9Y5W3 355 aaPredicted RBP5.43□□□□□ -1.54
VPS53-212ENST00000572259 COX11Q9Y6N1 276 aa5.43□□□□□ -1.54
VPS53-212ENST00000572259 ITPR1Q14643 2758 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CROCCQ5TZA2 2017 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SVILO95425 2214 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 KCNE1BA0A087WTH5 132 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 A0A1B0GUH1 482 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 RNF222A6NCQ9 220 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SYCE1LA8MT33 242 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 NPIPA3F8WFD2 350 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 H0YGG7 62 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 MKRN2OSH3BPM6 223 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 NR5A2O00482 541 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 RGS11O94810 467 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 NDUFB4O95168 129 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 TSPAN12O95859 305 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 LCKP06239 509 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 GLAP06280 429 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SLC35G6P0C7Q6 338 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CCDC166P0CW27 439 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 GP9P14770 177 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZNF24P17028 368 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 PSMB5P28074 263 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 GABRA4P48169 554 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CCR4P51679 360 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CCR8P51685 355 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 NR0B1P51843 470 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 GPX6P59796 221 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 TBPL1P62380 186 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 MAT1AQ00266 395 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 PJVKQ0ZLH3 352 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 TRAP1Q12931 704 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 SRSF6Q13247 344 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 FAM53BQ14153 422 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 GPR176Q14439 515 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 C1orf189Q5VU69 101 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 HIST2H2AA3Q6FI13 130 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZNF425Q6IV72 752 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 RNASEKQ6P5S7 137 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 PLXDC2Q6UX71 529 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZNF782Q6ZMW2 699 aaPredicted RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 SLC22A16Q86VW1 577 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 VRK2Q86Y07 508 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS53-212ENST00000572259 ST13P4Q8IZP2 240 aaPredicted RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 GTPBP8Q8N3Z3 284 aaPredicted RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 GCSAMQ8N6F7 178 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CSNK1A1LQ8N752 337 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 NOA1Q8NC60 698 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 PPFIBP2Q8ND30 876 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 TTLQ8NG68 377 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 PIGCQ92535 297 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 COQ8BQ96D53 544 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZNF285Q96NJ3 590 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 DUX5Q96PT3 197 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CCT8L2Q96SF2 557 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SLC29A1Q99808 456 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 AIF1LQ9BQI0 150 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 RBM24Q9BX46 236 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 ESRP2Q9H6T0 727 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 PLAC1Q9HBJ0 212 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CYSLTR2Q9NS75 346 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZDHHC18Q9NUE0 388 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 DDX28Q9NUL7 540 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 UFSP2Q9NUQ7 469 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 CD274Q9NZQ7 290 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 RCC2Q9P258 522 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 P2RX2Q9UBL9 471 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 DHCR7Q9UBM7 475 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 ZNF282Q9UDV7 671 aaPredicted RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 ERVK-19Q9WJR5 959 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 SLC22A14Q9Y267 594 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 B3GALT5Q9Y2C3 310 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 ACOT9Q9Y305 439 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 LRP12Q9Y561 859 aa5.42□□□□□ -1.54
VPS53-212ENST00000572259 MRPS18BQ9Y676 258 aaKnown RBP5.42□□□□□ -1.54
VPS53-212ENST00000572259 H3BMH7 237 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CDC7O00311 574 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 RRHO14718 337 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CTSVO60911 334 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 LDB3O75112 727 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CLN5O75503 358 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 NDUFA7O95182 113 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CPN1P15169 458 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 PCMT1P22061 227 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms