RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LCA5Q86VQ0 697 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 TMEM123Q8N131 208 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 KDM8Q8N371 416 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 OR2T11Q8NH01 316 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 MIPOL1Q8TD10 442 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 SSMEM1Q8WWF3 244 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 SLC35G5Q96KT7 338 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 EGLN1Q9GZT9 426 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 EGFL7Q9UHF1 273 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 CFAP73A6NFT4 308 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 F5H0A9 414 aaPredicted RBP15.17■□□□□ 0.02
CLK3-227ENST00000570296 M0R3G1 203 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 IGHV1-46P01743 117 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 PNMTP11086 282 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 DRD4P21917 467 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 PAFAH1B1P43034 410 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 PAX2Q02962 417 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 EPS8Q12929 822 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 ZDHHC24Q6UX98 284 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 BRD3OSQ6XYD6 125 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 FRMD7Q6ZUT3 714 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 RNF130Q86XS8 419 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 ZNF584Q8IVC4 421 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 DDIASQ8IXT1 998 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 OXGR1Q96P68 337 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 PAFAH2Q99487 392 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 PRPF18Q99633 342 aaKnown RBP15.17■□□□□ 0.02
CLK3-227ENST00000570296 KRTAP17-1Q9BYP8 105 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 TNFRSF12AQ9NP84 129 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 B3GAT1Q9P2W7 334 aa15.17■□□□□ 0.02
CLK3-227ENST00000570296 CFLARO15519 480 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 DHHO43323 396 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 RAD51CO43502 376 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 NPIPB7O75200 414 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 IGHV3-13P01766 116 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 LCKP06239 509 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 B4GALT1P15291 398 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 HBA1P69905 142 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 RBBP4Q09028 425 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 BNIP2Q12982 314 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 C1DQ13901 141 aaKnown RBP15.16■□□□□ 0.02
CLK3-227ENST00000570296 PHYHD1Q5SRE7 291 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 RNF165Q6ZSG1 346 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 HMGN2P46Q86SG4 172 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 SNX32Q86XE0 403 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 C20orf196Q8IYI0 205 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 MFSD8Q8NHS3 518 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 SGCDQ92629 289 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 ROPN1LQ96C74 230 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 COQ8BQ96D53 544 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 NEURL3Q96EH8 262 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 FUT8Q9BYC5 575 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 OR51I1Q9H343 314 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 ZNF180Q9UJW8 692 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 POFUT2Q9Y2G5 429 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 LRCH1Q9Y2L9 728 aa15.16■□□□□ 0.02
CLK3-227ENST00000570296 A0A096LPI6 279 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 TMEM114B3SHH9 223 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 FTCDNL1E5RQL4 147 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 H0YL77 283 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 LSM1O15116 133 aaKnown RBP15.15■□□□□ 0.02
CLK3-227ENST00000570296 GPR137BO60478 399 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 TGDSO95455 350 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 ERVS71-1P61550 626 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 FUT5Q11128 374 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 MFSD13AQ14CX5 517 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 PAQR4Q8N4S7 273 aaPredicted RBP15.15■□□□□ 0.02
CLK3-227ENST00000570296 ZSCAN4Q8NAM6 433 aaPredicted RBP15.15■□□□□ 0.02
CLK3-227ENST00000570296 SLC30A7Q8NEW0 376 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 CCDC126Q96EE4 140 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 LRR1Q96L50 414 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 MECRQ9BV79 373 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 BCL2L14Q9BZR8 327 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 C16orf95Q9H693 158 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 B3GAT2Q9NPZ5 323 aa15.15■□□□□ 0.02
CLK3-227ENST00000570296 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.15■□□□□ 0.02
CLK3-227ENST00000570296 UTP11Q9Y3A2 253 aaKnown RBP15.15■□□□□ 0.02
CLK3-227ENST00000570296 RNF103-CHMP3A0A140T963 221 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 SPRY3O43610 288 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 AHSA1O95433 338 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 ADH4P08319 380 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 OR12D1P0DN82 309 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 FUT4P22083 530 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 GTF2E2P29084 291 aaKnown RBP15.14■□□□□ 0.01
CLK3-227ENST00000570296 HPCAP84074 193 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 COL10A1Q03692 680 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 GLO1Q04760 184 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 PMS2P3Q13401 168 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 CLEC6AQ6EIG7 209 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 LRRC28Q86X40 367 aaPredicted RBP15.14■□□□□ 0.01
CLK3-227ENST00000570296 ZNF440Q8IYI8 595 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 POU5F2Q8N7G0 328 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 TBC1D15Q8TC07 691 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 STK35Q8TDR2 534 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 XAGE5Q8WWM1 108 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 NAPGQ99747 312 aaPredicted RBP15.14■□□□□ 0.01
CLK3-227ENST00000570296 OR51B6Q9H340 312 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 CDH20Q9HBT6 801 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 TCF7L2Q9NQB0 619 aa15.14■□□□□ 0.01
CLK3-227ENST00000570296 IGHV2-70DA0A0C4DH43 119 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms