RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GRNP28799 593 aaKnown RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 CHRNB4P30926 498 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 POLR2IP36954 125 aaKnown RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 ZNF133P52736 654 aaPredicted RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 CLDN17P56750 224 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ERVK-25P63136 954 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 RIPK1Q13546 671 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 MELKQ14680 651 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SLC36A3Q495N2 470 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ALG10Q5BKT4 473 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 EEF1A1P5Q5VTE0 462 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SMARCD3Q6STE5 483 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SEZ6L2Q6UXD5 910 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PTCHD4Q6ZW05 846 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SLC35D2Q76EJ3 337 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 P4HA3Q7Z4N8 544 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 GALNT5Q7Z7M9 940 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 MRGPRGQ86SM5 289 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 STK32CQ86UX6 486 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 HIPK1Q86Z02 1210 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 UEVLDQ8IX04 471 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PARP8Q8N3A8 854 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SVOPLQ8N434 492 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ZNF610Q8N9Z0 462 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ICA1LQ8NDH6 482 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 FANK1Q8TC84 345 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 HDAC2Q92769 488 aaKnown RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 TMEM54Q969K7 222 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SDCCAG3Q96C92 435 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 Q96M85 177 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 KCNK17Q96T54 332 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PRRG4Q9BZD6 226 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 TXNIPQ9H3M7 391 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 NELFAQ9H3P2 528 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 C12orf49Q9H741 205 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 INIPQ9NRY2 104 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SLC7A10Q9NS82 523 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 USE1Q9NZ43 259 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 MALT1Q9UDY8 824 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ZNF346Q9UL40 294 aaKnown RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 RRP15Q9Y3B9 282 aaKnown RBP8.2□□□□□ -1.1
VPS35-211ENST00000569950 ABCA12Q86UK0 2595 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 APCP25054 2843 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 GPR171O14626 319 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 MSTNO14793 375 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ARPC3O15145 178 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 RNF13O43567 381 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 SERPINI2O75830 405 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 PPP1R3DO95685 299 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 CLDN1O95832 211 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 IGHV3-9P01782 118 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ITGA5P08648 1049 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 APEHP13798 732 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 ZNF23P17027 643 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ZNF43P17038 809 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 COX5AP20674 150 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 AHCYP23526 432 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 GTF2E2P29084 291 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 IFNGR2P38484 337 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 BIDP55957 195 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 CTXN1P60606 82 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 PRPS1P60891 318 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 RPL27P61353 136 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 EFNB1P98172 346 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 COX10Q12887 443 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 OGFRL1Q5TC84 451 aaPredicted RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 LPCAT4Q643R3 524 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ACSM5Q6NUN0 579 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 LRFN4Q6PJG9 635 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 RRM2BQ7LG56 351 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ZDHHC13Q8IUH4 622 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 C20orf196Q8IYI0 205 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 LNX2Q8N448 690 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 CBR4Q8N4T8 237 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ZNF808Q8N4W9 903 aaPredicted RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 IQCF1Q8N6M8 205 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 ARIH2OSQ8N7S6 290 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 CNEP1R1Q8N9A8 125 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 OR6X1Q8NH79 312 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 RASD2Q96D21 266 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 MBOAT4Q96T53 435 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 TACO1Q9BSH4 297 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 LINC00470Q9BZP3 86 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 DCLRE1BQ9H816 532 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 RNPEPL1Q9HAU8 725 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 EMC3Q9P0I2 261 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 C6orf203Q9P0P8 240 aaPredicted RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 NOSIPQ9Y314 301 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 BOLA1Q9Y3E2 137 aa8.19□□□□□ -1.1
VPS35-211ENST00000569950 FLNBO75369 2602 aaKnown RBP8.19□□□□□ -1.1
VPS35-211ENST00000569950 RPL36A-HNRNPH2H7BZ11 118 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 DCTN6O00399 190 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 DVL2O14641 736 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 TRMUO75648 421 aaKnown RBP8.18□□□□□ -1.1
VPS35-211ENST00000569950 SLC2A10O95528 541 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 HIST1H2ABP04908 130 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 OSMP13725 252 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 GSTM3P21266 225 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 IGHV1-2P23083 117 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CDKN2AP42771 156 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms