RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LRRN3E7EW58 273 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 RNASEK-C17orf49H0YIS7 233 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 BLOC1S5-TXNDC5H3BN57 136 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ACOT7O00154 380 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SC5DO75845 299 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ZFPL1O95159 310 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 OPN1SWP03999 348 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SOAT1P35610 550 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 RASGEF1BQ0VAM2 473 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 NFATC2Q13469 925 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 OR7A5Q15622 319 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 HIST3H2BBQ8N257 126 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 FAM71CQ8NEG0 241 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 OR52E4Q8NGH9 312 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 OR5R1Q8NH85 324 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 LCORQ96JN0 433 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 CNN2Q99439 309 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 COPS8Q99627 209 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TPSD1Q9BZJ3 242 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 CIPCQ9C0C6 399 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 LRRN3Q9H3W5 708 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 RGCCQ9H4X1 137 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ASB8Q9H765 288 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 PRODH2Q9UF12 536 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TBX21Q9UL17 535 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 RPL36Q9Y3U8 105 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 MAP4K5Q9Y4K4 846 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 INSL5Q9Y5Q6 135 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 LNP1A1A4G5 178 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 H3BN98 237 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TLR4O00206 839 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SUV39H1O43463 412 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 MPZL2O60487 215 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 CLDN7O95471 211 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 MT-ND5P03915 603 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 C8GP07360 202 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 IGFBP1P08833 259 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 IRF2P14316 349 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 HOXB6P17509 224 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 RAB6AP20340 208 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 CD70P32970 193 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 PMELP40967 661 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 PCBP4P57723 403 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 PJVKQ0ZLH3 352 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ABRAXAS2Q15018 415 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 APOOLQ6UXV4 268 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SLC39A5Q6ZMH5 540 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TMPRSS7Q7RTY8 843 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 FAM160A2Q8N612 972 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 DCAF4L2Q8NA75 395 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TAAR9Q96RI9 348 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SELENOIQ9C0D9 397 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 LRTM1Q9HBL6 345 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SPHK2Q9NRA0 654 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 HEBP1Q9NRV9 189 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 KCNG2Q9UJ96 466 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 A0A0D9SG52 128 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 NPIPB15A6NHN6 443 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 TRBC1P01850 177 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ATXN8OSP0DMR3 200 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TBPP20226 339 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 DTYMKP23919 212 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 CTHP32929 405 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 BTG2P78543 158 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ZNF616Q08AN1 781 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TSSK4Q6SA08 328 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 BTNL3Q6UXE8 466 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 LHFPL4Q7Z7J7 247 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 MMP21Q8N119 569 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 OR6V1Q8N148 313 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TCEANCQ8N8B7 351 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ZNF610Q8N9Z0 462 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 MRPS31Q92665 395 aaKnown RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 ADGRE3Q9BY15 652 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ZNF430Q9H8G1 570 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 PTGFRNQ9P2B2 879 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SUSD2Q9UGT4 822 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 GGT3PA6NGU5 568 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 OR52A4PA6NMU1 304 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 HSD3B1P14060 373 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 KDELR2P33947 212 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SOX18P35713 384 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 CCR2P41597 374 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 IDH3GP51553 393 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 WNT4P56705 351 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 CACNG1Q06432 222 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 HERPUD1Q15011 391 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SYT12Q8IV01 421 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 RGP1Q92546 391 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 ECHDC3Q96DC8 303 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SLC41A3Q96GZ6 507 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SGCZQ96LD1 299 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 DPH2Q9BQC3 489 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 TMEM106CQ9BVX2 250 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 BRF2Q9HAW0 419 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ZNF230Q9UIE0 474 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 LRRK1Q38SD2 2015 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 H0YIV9 168 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 MASP2O00187 686 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 CLIC1O00299 241 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms