RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 APBB3O95704 486 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CDKN2AP42771 156 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 RBMS2Q15434 407 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 C2orf68Q2NKX9 166 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 STPG1Q5TH74 334 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 PRAMEF17Q5VTA0 474 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 SLC51BQ86UW2 128 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 MUC20Q8N307 709 aaPredicted RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 PPP1R14AQ96A00 147 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 TAS2R5Q9NYW4 299 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 WDR87Q6ZQQ6 2873 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 TRAV8-7A0A075B6U6 113 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 SDC3O75056 442 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 PTP4A3O75365 173 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 MAPK3P27361 379 aaPredicted RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 RPL35P42766 123 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 ADAM8P78325 824 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 OR7E24Q6IFN5 339 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 ADGRG3Q86Y34 549 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 SYS1Q8N2H4 156 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 STPG2Q8N412 459 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CGGBP1Q9UFW8 167 aaPredicted RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 MRTO4Q9UKD2 239 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 FBXO4Q9UKT5 387 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 SLC22A13Q9Y226 551 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 MED12Q93074 2177 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 B4DGG1 531 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 OGG1O15527 345 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 TGM6O95932 706 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 MAOAP21397 527 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 EFNB2P52799 333 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 BTG2P78543 158 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 ALKBH1Q13686 389 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 COMMD2Q86X83 199 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 OR10K1Q8NGX5 313 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 FAM174AQ8TBP5 190 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 FAM46BQ96A09 425 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CENPMQ9NSP4 180 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 ZNF106Q9H2Y7 1883 aaKnown RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 EEF1E1-BLOC1S5C9J1V9 151 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 RAB3DO95716 219 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 RAB40ALP0C0E4 278 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 ZNF28P17035 718 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 PBX2P40425 430 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 TSFMP43897 325 aaKnown RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 RPS11P62280 158 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS35-210ENST00000568784 KCTD20Q7Z5Y7 419 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 SLC2A12Q8TD20 617 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 RAB40AQ8WXH6 277 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 BADQ92934 168 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 WDR92Q96MX6 357 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 WDR76Q9H967 626 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 ENTPD2Q9Y5L3 495 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 KANTRA0A1W2PQU2 76 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 RENP00797 406 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 EGFP01133 1207 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 CTSBP07858 339 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 VSIG10L2P0DP72 767 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 PPP3CBP16298 524 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 GNALP38405 381 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 FAM122CQ6P4D5 195 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 LRFN4Q6PJG9 635 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 IQCF2Q8IXL9 164 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 TMEM185AQ8NFB2 350 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 MMABQ96EY8 250 aaPredicted RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 RADILQ96JH8 1075 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 DNAJB12Q9NXW2 375 aaKnown RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 SLC39A1Q9NY26 324 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 KLHDC2Q9Y2U9 406 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 KIAA1671Q9BY89 1806 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 FITM1A5D6W6 292 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 SLC25A12O75746 678 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 NMBP08949 121 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 SPOCK1Q08629 439 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 SMAD2Q15796 467 aaKnown RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 OR2AK2Q8NG84 335 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 OR14A16Q8NHC5 309 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 GPR148Q8TDV2 347 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 HAVCR1Q96D42 359 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 FBXL21Q9UKT6 434 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 MRPS33Q9Y291 106 aaKnown RBP13.22□□□□□ -0.29
VPS35-210ENST00000568784 ZNF337Q9Y3M9 751 aa13.22□□□□□ -0.29
VPS35-210ENST00000568784 C5orf51A6NDU8 294 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 F5H0A9 414 aaPredicted RBP13.21□□□□□ -0.29
VPS35-210ENST00000568784 HCRTR2O43614 444 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 AK1P00568 194 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 DNASE1L1P49184 302 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 DND1Q8IYX4 353 aaKnown RBP13.21□□□□□ -0.29
VPS35-210ENST00000568784 AVL9Q8NBF6 648 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 METTL21AQ8WXB1 218 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 MYADMQ96S97 322 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 PLXNA2O75051 1894 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 DCTN6O00399 190 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 GLCEO94923 617 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 NDUFB6O95139 128 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 IGKV1D-16P01601 117 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 DPP4P27487 766 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 LUMP51884 338 aaPredicted RBP13.21□□□□□ -0.29
VPS35-210ENST00000568784 ARFIP1P53367 373 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 PRICKLE4Q2TBC4 344 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms