RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MISPQ8IVT2 679 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ENKURQ8TC29 256 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 STK35Q8TDR2 534 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 EDAQ92838 391 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 C8orf44Q96CB5 159 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 TSPAN10Q9H1Z9 355 aaPredicted RBP18.31■□□□□ 0.52
CLN3-230ENST00000568076 RNF121Q9H920 327 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ANKRD10Q9NXR5 420 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 POU2F3Q9UKI9 436 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 EXPH5Q8NEV8 1989 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ZNF879B4DU55 563 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 PLPP3O14495 311 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 GDF9O60383 454 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 CFIP05156 583 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 SRMP19623 302 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ALOX5APP20292 161 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 IL11P20809 199 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 PITPNBP48739 271 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 RPL27P61353 136 aaKnown RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 OTPQ5XKR4 325 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 BICRALQ6AI39 1079 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 KCTD20Q7Z5Y7 419 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 PPP1R3BQ86XI6 285 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 YIPF7Q8N8F6 280 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 TRIM63Q969Q1 353 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ABHD1Q96SE0 405 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 CTRCQ99895 268 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 WACQ9BTA9 647 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-230ENST00000568076 FRRS1LQ9P0K9 344 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 LAMP5Q9UJQ1 280 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ING1Q9UK53 422 aaPredicted RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 ALPK2Q86TB3 2170 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ADAMTS9Q9P2N4 1935 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ANKUB1A6NFN9 424 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 XKRYO14609 159 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 TACSTD2P09758 323 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 PRKAR1AP10644 381 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 NKX2-5P52952 324 aaPredicted RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 SF3A2Q15428 464 aaKnown RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 YIF1BQ5BJH7 314 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 FAM220AQ7Z4H9 259 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 CPEB2Q7Z5Q1 589 aaKnown RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 DUSP18Q8NEJ0 188 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ZNF417Q8TAU3 575 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 IFI44Q8TCB0 444 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 PHYHIPQ92561 330 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 KLHL15Q96M94 604 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 FRMD6Q96NE9 622 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ZNF587Q96SQ5 575 aaPredicted RBP18.3■□□□□ 0.52
CLN3-230ENST00000568076 INTS14Q96SY0 518 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 SLC25A18Q9H1K4 315 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 MED11Q9P086 117 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 ABRACLQ9P1F3 81 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 CLEC4AQ9UMR7 237 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 B9D1Q9UPM9 204 aa18.3■□□□□ 0.52
CLN3-230ENST00000568076 WDR87Q6ZQQ6 2873 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 A0A1B0GTH9 108 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 PRSS37A4D1T9 235 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 PATE3B3GLJ2 98 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 FTCDNL1E5RQL4 147 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 INSM1Q01101 510 aaPredicted RBP18.29■□□□□ 0.52
CLN3-230ENST00000568076 ALKBH1Q13686 389 aaKnown RBP18.29■□□□□ 0.52
CLN3-230ENST00000568076 FAM69BQ5VUD6 431 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 RNF138Q8WVD3 245 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 NAT6Q93015 286 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 PMEPA1Q969W9 287 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 FOXN4Q96NZ1 517 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 DERL3Q96Q80 235 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 AMELYQ99218 206 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 TXNIPQ9H3M7 391 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 CPAMD8Q8IZJ3 1885 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 DMDP11532 3685 aa18.29■□□□□ 0.52
CLN3-230ENST00000568076 AHSA1O95433 338 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 C17orf67Q0P5P2 114 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 PHF19Q5T6S3 580 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 RSBN1Q5VWQ0 802 aaPredicted RBP18.28■□□□□ 0.52
CLN3-230ENST00000568076 MZT2BQ6NZ67 158 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 TMEM205Q6UW68 189 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 ARSKQ6UWY0 536 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 MAML2Q8IZL2 1156 aaPredicted RBP18.28■□□□□ 0.52
CLN3-230ENST00000568076 THAP7Q9BT49 309 aaPredicted RBP18.28■□□□□ 0.52
CLN3-230ENST00000568076 CRB3Q9BUF7 120 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 HDHD2Q9H0R4 259 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 BRD7Q9NPI1 651 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 NLKQ9UBE8 527 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 KCNG2Q9UJ96 466 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 FKBP7Q9Y680 259 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 FRYLO94915 3013 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 KRT8P05787 483 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 IMPDH2P12268 514 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 HLA-DOBP13765 273 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 MELKQ14680 651 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 ATAD3CQ5T2N8 411 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 ZNF57Q68EA5 555 aaPredicted RBP18.28■□□□□ 0.52
CLN3-230ENST00000568076 PLET1Q6UQ28 207 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 LRRC69Q6ZNQ3 347 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 THEM6Q8WUY1 208 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 TMEM234Q8WY98 164 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 ST6GAL2Q96JF0 529 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms