RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ZFPL1O95159 310 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 TCRBP04435 133 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 F13BP05160 661 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 GIMD1P0DJR0 217 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OR8G3PP0DMU2 310 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 TFPIP10646 304 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 FOLR1P15328 257 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 STOMP27105 288 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 DPP4P27487 766 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ITPKBP27987 946 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ABCD3P28288 659 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 EVI2BP34910 448 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 NANOS3P60323 173 aaKnown RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 RAP1BP61224 184 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 RAP1AP62834 184 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 CD83Q01151 205 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ROM1Q03395 351 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 CFHR1Q03591 330 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ZP2Q05996 745 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 FAPQ12884 760 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 MADCAM1Q13477 382 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 KCNAB1Q14722 419 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 CLPPQ16740 277 aaPredicted RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 C1orf140Q5VVS0 124 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 LIPNQ5VXI9 398 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OLFML2AQ68BL7 652 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 SLC18B1Q6NT16 456 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 TMEM71Q6P5X7 295 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 FAM199XQ6PEV8 388 aaPredicted RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 DNM1P34Q6PK57 102 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 LYPD4Q6UWN0 246 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 STAC2Q6ZMT1 411 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ASB18Q6ZVZ8 466 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 COX15Q7KZN9 410 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 MARCH3Q86UD3 253 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 LRRTM1Q86UE6 522 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 GLCCI1Q86VQ1 547 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ZNF227Q86WZ6 799 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 SIAH3Q8IW03 269 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 PRR22Q8IZ63 422 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 UBE2J2Q8N2K1 259 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 DEFB119Q8N690 84 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 ZNF511Q8NB15 262 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OR6N2Q8NGY6 317 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OR2G2Q8NGZ5 317 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OR8K3Q8NH51 312 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OR56B4Q8NH76 319 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 LILRB4Q8NHJ6 448 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 OTOSQ8NHW6 89 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 GPR148Q8TDV2 347 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 GPR119Q8TDV5 335 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 METTL21AQ8WXB1 218 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 CCDC74AQ96AQ1 378 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 HAVCR1Q96D42 359 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 CLIP3Q96DZ5 547 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 C4orf45Q96LM5 186 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 HYLS1Q96M11 299 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 DCBLD2Q96PD2 775 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 FYTTD1Q96QD9 318 aaKnown RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 GFI1Q99684 422 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 PDCD1LG2Q9BQ51 273 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 TMEM246Q9BRR3 403 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 DUSP23Q9BVJ7 150 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 TTTY10Q9BZA0 68 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 MED28Q9H204 178 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 GHITMQ9H3K2 345 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 SLC17A5Q9NRA2 495 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 FGF21Q9NSA1 209 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 RYDENQ9NUL5 291 aaKnown RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 MCUBQ9NWR8 336 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 PAQR5Q9NXK6 330 aaPredicted RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 TAS2R5Q9NYW4 299 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 KLHL9Q9P2J3 617 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 IKZF2Q9UKS7 526 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 MKL2Q9ULH7 1088 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 B9D1Q9UPM9 204 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 KLHDC2Q9Y2U9 406 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 RBMX2Q9Y388 322 aaKnown RBP5.66□□□□□ -1.5
CLN3-223ENST00000566472 TMED7Q9Y3B3 224 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 NUP210LQ5VU65 1888 aa5.66□□□□□ -1.5
CLN3-223ENST00000566472 SCN3AQ9NY46 2000 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 NINQ8N4C6 2090 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 IGLV3-32A0A0A0MS00 114 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 IGLV1-36A0A0B4J1U3 117 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 ACOT7O00154 380 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 PLPP3O14495 311 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 ADAM10O14672 748 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 MAGEB4O15481 346 aaPredicted RBP5.65□□□□□ -1.5
CLN3-223ENST00000566472 YKT6O15498 198 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 ZNF208O43345 1280 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 SERPINI2O75830 405 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 SNAPC5O75971 98 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 KRT33AO76009 404 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 OR6A2O95222 327 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 CD3GP09693 182 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 H2AFB2P0C5Z0 115 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 ANXA3P12429 323 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 FSTP19883 344 aa5.65□□□□□ -1.5
CLN3-223ENST00000566472 BCKDHBP21953 392 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms