RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 MEPCEQ7L2J0 689 aaKnown RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 MYDGFQ969H8 173 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 CPNE4Q96A23 557 aaPredicted RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 RNFT2Q96EX2 444 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 ARHGAP9Q9BRR9 750 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 LUZP4Q9P127 313 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 TMEM8BA6NDV4 472 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 TRAF3IP2O43734 574 aaPredicted RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 RENP00797 406 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 PIPP12273 146 aaPredicted RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 ZNF43P17038 809 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 SLC2A5P22732 501 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 MTNR1AP48039 350 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 RPS7P62081 194 aaKnown RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 C3AR1Q16581 482 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 LINC00303Q3SY05 128 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 C9orf43Q8TAL5 461 aaPredicted RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 CRELD1Q96HD1 420 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 TXNDC15Q96J42 360 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 RPRD1BQ9NQG5 326 aaKnown RBP27.3■■□□□ 1.96
CTCF-203ENST00000566078 SNX5Q9Y5X3 404 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 VAMP5O95183 116 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 CLPTM1O96005 669 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 SLC16A1P53985 500 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 RPS3AP61247 264 aaKnown RBP27.29■■□□□ 1.96
CTCF-203ENST00000566078 NHLRC1Q6VVB1 395 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 SIAH3Q8IW03 269 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 STX19Q8N4C7 294 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 NMNAT2Q9BZQ4 307 aa27.29■■□□□ 1.96
CTCF-203ENST00000566078 LOC102725191A0A1B0GVB3 256 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 CCDC182A6NF36 153 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 A6NIZ1 184 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 MT-ND2P03891 347 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 CDK1P06493 297 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 BIDP55957 195 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 RAP1BP61224 184 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 RAP1AP62834 184 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 TUBA4AP68366 448 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 ST3GAL4Q11206 333 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 NADK2Q4G0N4 442 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 FAM205BPQ63HN1 556 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 ROBO4Q8WZ75 1007 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 TIMP4Q99727 224 aa27.28■■□□□ 1.96
CTCF-203ENST00000566078 TRIM64CA6NLI5 447 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 STSP08842 583 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 RUNX1T1Q06455 604 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 POU4F3Q15319 338 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 EEF1A1P5Q5VTE0 462 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 GTF2IRD2BQ6EKJ0 949 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 GTF2IRD2Q86UP8 949 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 WDFY1Q8IWB7 410 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 KISS1RQ969F8 398 aaPredicted RBP27.27■■□□□ 1.96
CTCF-203ENST00000566078 LGALS12Q96DT0 336 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SNX18Q96RF0 628 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 ASB6Q9NWX5 421 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 WARS2Q9UGM6 360 aaKnown RBP27.27■■□□□ 1.96
CTCF-203ENST00000566078 SPENQ96T58 3664 aaKnown RBP27.27■■□□□ 1.96
CTCF-203ENST00000566078 PRSS37A4D1T9 235 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SLC22A31A6NKX4 558 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 NPIPA2E9PIF3 369 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 NPIPA3F8WFD2 350 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SPI1P17947 270 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SLC25A1P53007 311 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 MVKQ03426 396 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 ABLIM2Q6H8Q1 611 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 B3GLCTQ6Y288 498 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 PRSS48Q7RTY5 328 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 PM20D2Q8IYS1 436 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SPARTQ8N0X7 666 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 OR9K2Q8NGE7 335 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SIGLEC11Q96RL6 698 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 EMC6Q9BV81 110 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 SYT4Q9H2B2 425 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 PAQR5Q9NXK6 330 aaPredicted RBP27.27■■□□□ 1.96
CTCF-203ENST00000566078 CAMK2AQ9UQM7 478 aa27.27■■□□□ 1.96
CTCF-203ENST00000566078 PIEZO2Q9H5I5 2752 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 APOL3O95236 402 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 SLC17A1Q14916 467 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 KLHL22Q53GT1 634 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 EXD3Q8N9H8 876 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 OR51L1Q8NGJ5 315 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 PNPLA2Q96AD5 504 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 WDYHV1Q96HA8 205 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 TSSK2Q96PF2 358 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 TEAD3Q99594 435 aa27.26■■□□□ 1.95
CTCF-203ENST00000566078 VSX1Q9NZR4 365 aaPredicted RBP27.26■■□□□ 1.95
CTCF-203ENST00000566078 A0A1B0GVC2 190 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 MRPS14O60783 128 aaKnown RBP27.25■■□□□ 1.95
CTCF-203ENST00000566078 WISP2O76076 250 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 CPN1P15169 458 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 C21orf33P30042 268 aaPredicted RBP27.25■■□□□ 1.95
CTCF-203ENST00000566078 LGALS3BPQ08380 585 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 RAB40BQ12829 278 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 FCRLAQ7L513 359 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 OR52I1Q8NGK6 324 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 SF3B5Q9BWJ5 86 aaKnown RBP27.25■■□□□ 1.95
CTCF-203ENST00000566078 MRPS18AQ9NVS2 196 aaKnown RBP27.25■■□□□ 1.95
CTCF-203ENST00000566078 BSNQ9UPA5 3926 aa27.25■■□□□ 1.95
CTCF-203ENST00000566078 IRGMA1A4Y4 181 aa27.24■■□□□ 1.95
CTCF-203ENST00000566078 AQP7O14520 342 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms