RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FAM32AQ9Y421 112 aaKnown RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 ARPC4-TTLL3A0A0A6YYG9 625 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 A0A1W2PRG6 482 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 M0R3G1 203 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 BCL10O95999 233 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 IFNGR1P15260 489 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 NCK1P16333 377 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 CSNK1A1P48729 337 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 CDH11P55287 796 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 BIDP55957 195 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 RPS4XP62701 263 aaKnown RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 NKX6-1P78426 367 aaPredicted RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 ARF1P84077 181 aaKnown RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 LGALS3BPQ08380 585 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 CAMK2DQ13557 499 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 C3orf36Q3SXR2 165 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 HIKESHIQ53FT3 197 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 CARD17Q5XLA6 110 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 SLC22A25Q6T423 547 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 NHLRC1Q6VVB1 395 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 LINGO2Q7L985 606 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 LRRC17Q8N6Y2 441 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 KBTBD8Q8NFY9 601 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 PFN4Q8NHR9 129 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 SMAP2Q8WU79 429 aaPredicted RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 NSL1Q96IY1 281 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 TXNDC15Q96J42 360 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 CDRT15Q96T59 188 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 KCNS3Q9BQ31 491 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 C1QTNF6Q9BXI9 259 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 ULBP2Q9BZM5 246 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 ANKRD19PQ9H560 264 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 DCAF13Q9NV06 445 aaKnown RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 CISD1Q9NZ45 108 aaKnown RBP11.72□□□□□ -0.53
CLK3-216ENST00000564468 POFUT2Q9Y2G5 429 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 ENPP4Q9Y6X5 453 aa11.72□□□□□ -0.53
CLK3-216ENST00000564468 ZNF469Q96JG9 3925 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 SHISA9B4DS77 424 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 MCIDASD6RGH6 385 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 IFI30P13284 250 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 ITGA2P17301 1181 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 TCN1P20061 433 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 YAP1P46937 504 aaKnown RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 DAP3P51398 398 aaKnown RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 SLC25A3Q00325 362 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 FOXD4Q12950 439 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 ANKDD1AQ495B1 522 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 PRSS57Q6UWY2 283 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 DEFB107AQ8IZN7 70 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 ARHGAP24Q8N264 748 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 RNF148Q8N7C7 305 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 FAM169BQ8N8A8 192 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 LILRB1Q8NHL6 650 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 ACOT11Q8WXI4 607 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 ZNF566Q969W8 418 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 BPIFA2Q96DR5 249 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 TRMT61AQ96FX7 289 aaKnown RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 SLC25A44Q96H78 314 aaPredicted RBP11.71□□□□□ -0.53
CLK3-216ENST00000564468 GSX2Q9BZM3 304 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 GRIP2Q9C0E4 1043 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 INIPQ9NRY2 104 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 C20orf141Q9NUB4 165 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 ADAM21Q9UKJ8 722 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 LAMP3Q9UQV4 416 aa11.71□□□□□ -0.53
CLK3-216ENST00000564468 A0A096LPE4 126 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 A0A1W2PPZ6 126 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 NPIPB13A6NJU9 1138 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 CENPBD1B2RD01 187 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 NPIPB4C9JG80 1138 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 IGHG1P01857 330 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 SAGP10523 405 aaPredicted RBP11.7□□□□□ -0.54
CLK3-216ENST00000564468 NR2C1P13056 603 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 PAX1P15863 534 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 RHCEP18577 417 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 SLC9A3P48764 834 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 ADAM8P78325 824 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 RPL18Q07020 188 aaKnown RBP11.7□□□□□ -0.54
CLK3-216ENST00000564468 TAF11Q15544 211 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 FXNQ16595 210 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 AGAP6Q5VW22 663 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 ZNF730Q6ZMV8 503 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 FITM2Q8N6M3 262 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 IGFBPL1Q8WX77 278 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 NANOS1Q8WY41 292 aaKnown RBP11.7□□□□□ -0.54
CLK3-216ENST00000564468 TMEM54Q969K7 222 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 MCUR1Q96AQ8 359 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 NSMCE2Q96MF7 247 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 SLC38A2Q96QD8 506 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 NDEL1Q9GZM8 345 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 FAM53CQ9NYF3 392 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 GLTPQ9NZD2 209 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 RHCGQ9UBD6 479 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 CRNNQ9UBG3 495 aaPredicted RBP11.7□□□□□ -0.54
CLK3-216ENST00000564468 CD300AQ9UGN4 299 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 SNX13Q9Y5W8 968 aa11.7□□□□□ -0.54
CLK3-216ENST00000564468 B2RBV5 119 aa11.69□□□□□ -0.54
CLK3-216ENST00000564468 J3KTA2 159 aa11.69□□□□□ -0.54
CLK3-216ENST00000564468 FFAR1O14842 300 aa11.69□□□□□ -0.54
CLK3-216ENST00000564468 CRYAAP02489 173 aa11.69□□□□□ -0.54
CLK3-216ENST00000564468 H1F0P07305 194 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms