RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TM4SF19Q96DZ7 209 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZBED6CLQ96FA7 236 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 COQ2Q96H96 371 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ALKBH3Q96Q83 286 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF382Q96SR6 550 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 MTERF1Q99551 399 aaKnown RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 NDUFAF3Q9BU61 184 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 C1QTNF1Q9BXJ1 281 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 BOLA2Q9H3K6 86 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TUBB1Q9H4B7 451 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 EPHX3Q9H6B9 360 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 NIPAL2Q9H841 368 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 UBTD1Q9HAC8 227 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 RAB9BQ9NP90 201 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 SPAG4Q9NPE6 437 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 MIEF1Q9NQG6 463 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 POLE4Q9NR33 117 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CYSLTR2Q9NS75 346 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PIGVQ9NUD9 493 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 MED9Q9NWA0 146 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 OR12D3Q9UGF7 316 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 NXT1Q9UKK6 140 aaKnown RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 PLAGL1Q9UM63 463 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 MEMO1Q9Y316 297 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TMEM184BQ9Y519 407 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 NME7Q9Y5B8 376 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TRIP12Q14669 1992 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 ADCY10Q96PN6 1610 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MED14O60244 1454 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 FGD6Q6ZV73 1430 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 YTHDC2Q9H6S0 1430 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 NEDD4P46934 1319 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 LOC105369274A0A096LPK9 316 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 KIR2DS5A0A0G2JLQ3 304 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 LOC102723532A0A0G2JNH3 316 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 IGLV5-39A0A0G2JS06 123 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 B4DGG1 531 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SEC14L6B5MCN3 397 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ZNF814B7Z6K7 855 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TEX22C9J3V5 150 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ANHXE9PGG2 379 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 KIR2DS3K7RE56 304 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 M0R143 59 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MRASO14807 208 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RS1O15537 224 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TIMM8AO60220 97 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 TPST2O60704 377 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 PAGE4O60829 102 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CREG1O75629 220 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CLDN9O95484 217 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ETHE1O95571 254 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TSPAN12O95859 305 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MT-CO2P00403 227 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CA3P07451 260 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RFPL3SP0C7P2 107 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SMIM18P0DKX4 95 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ARSAP15289 507 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 NCK1P16333 377 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ZNF30P17039 623 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 KLRC2P26717 231 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TIA1P31483 386 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS35-205ENST00000563984 IFNGR2P38484 337 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 PMELP40967 661 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CD200P41217 278 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RAB7AP51149 207 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 XKP51811 444 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 EFNA3P52797 238 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 LINC00205P59089 165 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 LCN2P80188 198 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ECH1Q13011 328 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ELAVL3Q14576 367 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 EFNB3Q15768 340 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TNXAQ16473 311 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MAPK14Q16539 360 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MICAQ29983 383 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ZNF528Q3MIS6 628 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SLC22A6Q4U2R8 563 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CBWD6Q4V339 395 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CBWD3Q5JTY5 395 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 AGAP6Q5VW22 663 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SAMD13Q5VXD3 122 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TMEM225Q6GV28 225 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ASPHD2Q6ICH7 369 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 KCNIP4Q6PIL6 250 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RHBDF2Q6PJF5 856 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 NOXA1Q86UR1 476 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ADIPOR2Q86V24 386 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TRABD2AQ86V40 505 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RANBP3LQ86VV4 465 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 LRRC28Q86X40 367 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 FAM219AQ8IW50 185 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ADGRF3Q8IZF5 1079 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR4N4Q8N0Y3 316 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SYS1Q8N2H4 156 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 C9orf62Q8N4C0 152 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ARL14EPQ8N8R7 260 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 ATP6V1C2Q8NEY4 427 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CADM4Q8NFZ8 388 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR2AK2Q8NG84 335 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR5J2Q8NH18 312 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms