RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 FGD2Q7Z6J4 655 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 THAP5Q7Z6K1 395 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 CCDC103Q8IW40 242 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 CHERPQ8IWX8 916 aaKnown RBP12.92□□□□□ -0.34
SHMT2-210ENST00000553950 NOXO1Q8NFA2 376 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 MBD3L2Q8NHZ7 208 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-210ENST00000553950 TMEM163Q8TC26 289 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 ABHD3Q8WU67 409 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 ROBO4Q8WZ75 1007 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 RFKQ969G6 155 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 INTS12Q96CB8 462 aaKnown RBP12.92□□□□□ -0.34
SHMT2-210ENST00000553950 SLC25A44Q96H78 314 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-210ENST00000553950 B3GAT2Q9NPZ5 323 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 LRRC42Q9Y546 428 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 FLVCR1Q9Y5Y0 555 aa12.92□□□□□ -0.34
SHMT2-210ENST00000553950 PRR23D1E9PI22 279 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 SLC43A1O75387 559 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 YES1P07947 543 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 PRR23D2P0DMB1 279 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 HIST1H1CP16403 213 aaKnown RBP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CRABP1P29762 137 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ACVR1BP36896 505 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CENPAP49450 140 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 BIDP55957 195 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CLDN17P56750 224 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CLRN1P58418 232 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 LGALS3BPQ08380 585 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 SLC25A30Q5SVS4 291 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ARMC4Q5T2S8 1044 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 LCN1P1Q5VSP4 162 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 TMEM236Q5W0B7 351 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ACSM5Q6NUN0 579 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 MARVELD2Q8N4S9 558 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ZNF566Q969W8 418 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CNBD2Q96M20 576 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 Q96M85 177 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 MUS81Q96NY9 551 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 CLN6Q9NWW5 311 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ASB6Q9NWX5 421 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 ZNF346Q9UL40 294 aaKnown RBP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 BLOC1S6Q9UL45 172 aa12.91□□□□□ -0.34
SHMT2-210ENST00000553950 NOSIPQ9Y314 301 aaKnown RBP12.91□□□□□ -0.34
SHMT2-210ENST00000553950 PRSS37A4D1T9 235 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 SH3D21A4FU49 640 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 PRODHO43272 600 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 RAMP1O60894 148 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 AQP8O94778 261 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 HLA-DOBP13765 273 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 TIMP3P35625 211 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 BLVRAP53004 296 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 SLC25A1P53007 311 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 PER3P56645 1201 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 CSNK2BP67870 215 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 MELKQ14680 651 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 MAD2L1BPQ15013 274 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-210ENST00000553950 MESTQ5EB52 335 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 SLC35F1Q5T1Q4 408 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 NXNL2Q5VZ03 156 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 TMEM211Q6ICI0 200 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 LEG1Q6P5S2 330 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 CXXC5Q7LFL8 322 aaKnown RBP12.9□□□□□ -0.34
SHMT2-210ENST00000553950 AAED1Q7RTV5 226 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 ABHD12BQ7Z5M8 362 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-210ENST00000553950 ENTHD1Q8IYW4 607 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 KDM8Q8N371 416 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 FAM26EQ8N5C1 309 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 TCEANCQ8N8B7 351 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 SDR9C7Q8NEX9 313 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 OR52E2Q8NGJ4 325 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 OR2T4Q8NH00 348 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 RASD2Q96D21 266 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 LRR1Q96L50 414 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 ENKD1Q9H0I2 346 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 MED29Q9NX70 200 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 VSX1Q9NZR4 365 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-210ENST00000553950 H2AFY2Q9P0M6 372 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-210ENST00000553950 ATRXP46100 2492 aa12.9□□□□□ -0.34
SHMT2-210ENST00000553950 ZZEF1O43149 2961 aa12.9□□□□□ -0.35
SHMT2-210ENST00000553950 IRGMA1A4Y4 181 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 SLC35F4A4IF30 521 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 ARHGEF9O43307 516 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 PRKYO43930 277 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 MRPL33O75394 65 aaKnown RBP12.89□□□□□ -0.35
SHMT2-210ENST00000553950 IL2RAP01589 272 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 GNAO1P09471 354 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 AGTR1P30556 359 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 CSNK1A1P48729 337 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 MLLT10P55197 1068 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 CD47Q08722 323 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 TMED1Q13445 227 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 CRMP1Q14194 572 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 STK11Q15831 433 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 OCLNQ16625 522 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 SLC35D3Q5M8T2 416 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 RIPPLY2Q5TAB7 128 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 NIPAL3Q6P499 406 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 RPTNQ6XPR3 784 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 POMGNT2Q8NAT1 580 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 SLC37A3Q8NCC5 494 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms