RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 BIVMQ86UB2 503 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 COMMD7Q86VX2 200 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 JAZF1Q86VZ6 243 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OOSP2Q86WS3 158 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OR6V1Q8N148 313 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF615Q8N8J6 731 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 C19orf47Q8N9M1 422 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 LRRC75AQ8NAA5 344 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OR4D10Q8NGI6 311 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OR5AK2Q8NH90 309 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PPP1R14AQ96A00 147 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 KTI12Q96EK9 354 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 S100A16Q96FQ6 103 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TSPAN32Q96QS1 320 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 LPAR4Q99677 370 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MAP3K3Q99759 626 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CLEC4MQ9H2X3 399 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PLEKHA1Q9HB21 404 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TCF7L1Q9HCS4 588 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 NANSQ9NR45 359 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 DZANK1Q9NVP4 752 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TAS2R10Q9NYW0 307 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 IKZF2Q9UKS7 526 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 POMT2Q9UKY4 750 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 EFCAB7A8K855 629 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF749O43361 778 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 CTNSO60931 367 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 AKR7A3O95154 331 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SIX6O95475 246 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ABHD16AO95870 558 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 CD1AP06126 327 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 RNH1P13489 461 aaKnown RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GABRG2P18507 467 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 LCN1P31025 176 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 AKT2P31751 481 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 RPL18Q07020 188 aaKnown RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ALKBH1Q13686 389 aaKnown RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 CBFBQ13951 182 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GRM7Q14831 915 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 C2orf68Q2NKX9 166 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 Q499Y3 187 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 KLHL26Q53HC5 615 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 FAM69AQ5T7M9 428 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GLDNQ6ZMI3 551 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 LRRTM1Q86UE6 522 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 DND1Q8IYX4 353 aaKnown RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 OR6N2Q8NGY6 317 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 HAVCR1Q96D42 359 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 MMABQ96EY8 250 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 MSANTD3Q96H12 275 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 LRFN5Q96NI6 719 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 OR1F2PQ96R84 312 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 G6PC3Q9BUM1 346 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ACTR6Q9GZN1 396 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 NRSN2Q9GZP1 204 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SYT4Q9H2B2 425 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SEMA6CQ9H3T2 930 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 MMP25Q9NPA2 562 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SCML1Q9UN30 329 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 HIF3AQ9Y2N7 669 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 AUP1Q9Y679 476 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 RNF215Q9Y6U7 377 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 LOC105371267A0A1B0GV96 52 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 CDC14CA4D256 554 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 TEX46H3BTG2 121 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PYCARD-AS1I3L0S3 204 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 M0R233 179 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PDCD5O14737 125 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SHOXO15266 292 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ITGA10O75578 1167 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PPM1BO75688 479 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SEMA4FO95754 770 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 TGM6O95932 706 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PLGP00747 810 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 CD14P08571 375 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 VSIG10L2P0DP72 767 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 NUDT1P36639 197 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GRK6P43250 576 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PPM1FP49593 454 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ART1P52961 327 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 AP2S1P53680 142 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 DMWDQ09019 674 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 FZD2Q14332 565 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SHHQ15465 462 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PRTGQ2VWP7 1150 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SFRP5Q5T4F7 317 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ARMC6Q6NXE6 501 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SLC16A9Q7RTY1 509 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GLRX5Q86SX6 157 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ATG4DQ86TL0 474 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 SLC43A2Q8N370 569 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PRSS35Q8N3Z0 413 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 THEM6Q8WUY1 208 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM106AQ96A25 262 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 MIB2Q96AX9 1013 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 ELMOD3Q96FG2 381 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 GPX7Q96SL4 187 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-213ENST00000552720 UBQLN2Q9UHD9 624 aa6.81□□□□□ -1.32
LIMA1-213ENST00000552720 PIAS3Q9Y6X2 628 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms