RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PPICP45877 212 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 MNX1P50219 401 aaPredicted RBP13.72□□□□□ -0.21
CUX1-214ENST00000550008 PUDPQ08623 228 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 C17orf67Q0P5P2 114 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 ZMYND11Q15326 602 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 C12orf73Q69YU5 71 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 TMEM205Q6UW68 189 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 BRIX1Q8TDN6 353 aaKnown RBP13.72□□□□□ -0.21
CUX1-214ENST00000550008 ADAMTS14Q8WXS8 1223 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 MICU1Q9BPX6 476 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 LIN7BQ9HAP6 207 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 KLHL13Q9P2N7 655 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 SHISA8B8ZZ34 492 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 P2RY10O00398 339 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 PRH1P02810 166 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 MAGEB1P43366 347 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 MTNR1BP49286 362 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CLDN17P56750 224 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 ACKR1Q16570 336 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 TPRA1Q86W33 373 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 TMEM52Q8NDY8 209 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CGGBP1Q9UFW8 167 aaPredicted RBP13.72□□□□□ -0.21
CUX1-214ENST00000550008 ACOT7O00154 380 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 HSPA12AO43301 675 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 GLCEO94923 617 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 MVDP53602 400 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CD300CQ08708 224 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 FAM53BQ14153 422 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 ZIC1Q15915 447 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CBLN3Q6UW01 205 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 SIAH3Q8IW03 269 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 ZNF100Q8IYN0 542 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 HOXB13Q92826 284 aaPredicted RBP13.72□□□□□ -0.21
CUX1-214ENST00000550008 ELMOD3Q96FG2 381 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 GPA33Q99795 319 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 SEMA4CQ9C0C4 833 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 SLC6A15Q9H2J7 730 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 WDR76Q9H967 626 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 POLE3Q9NRF9 147 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 IL20Q9NYY1 176 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 A8MVM7 634 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 GCM2O75603 506 aaPredicted RBP13.71□□□□□ -0.21
CUX1-214ENST00000550008 GDF1P27539 372 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 PLP2Q04941 152 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 MLC1Q15049 377 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 CHRFAM7AQ494W8 412 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 Q499Y3 187 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ZNF704Q6ZNC4 412 aaPredicted RBP13.71□□□□□ -0.21
CUX1-214ENST00000550008 FAM57BQ71RH2 274 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ARHGAP9Q9BRR9 750 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ABRACLQ9P1F3 81 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ZNF346Q9UL40 294 aaKnown RBP13.71□□□□□ -0.21
CUX1-214ENST00000550008 RHBDD3Q9Y3P4 386 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 UGT2A1Q9Y4X1 527 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 SCN5AQ14524 2016 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 BLACEA4D250 179 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 TFP02787 698 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 NPR2P20594 1047 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 CD79BP40259 229 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 DEFA5Q01523 94 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 KIF18BQ86Y91 864 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 DVL3Q92997 716 aaPredicted RBP13.71□□□□□ -0.21
CUX1-214ENST00000550008 ARHGDIGQ99819 225 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ST6GALNAC5Q9BVH7 336 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ACTR6Q9GZN1 396 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 SLC25A19Q9HC21 320 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 COQ3Q9NZJ6 369 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 CIB4A0PJX0 185 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ARRDC5A6NEK1 342 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 HMX3A6NHT5 357 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 KNG1P01042 644 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 LIMS3P0CW19 117 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 LIMS4P0CW20 117 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 DPP4P27487 766 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 GPLD1P80108 840 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 ALKBH1Q13686 389 aaKnown RBP13.71□□□□□ -0.21
CUX1-214ENST00000550008 BEST3Q8N1M1 668 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 GIMAP5Q96F15 307 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 WDR90Q96KV7 1748 aa13.71□□□□□ -0.21
CUX1-214ENST00000550008 HTR3BO95264 441 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 IGHG1P01857 330 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 ALDOBP05062 364 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 SRMP19623 302 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 CXADRP78310 365 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 GRK1Q15835 563 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 BAIAP2L2Q6UXY1 529 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 OR7G1Q8NGA0 311 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 GPBAR1Q8TDU6 330 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 NUDT9Q9BW91 350 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 ULBP2Q9BZM5 246 aa13.71□□□□□ -0.22
CUX1-214ENST00000550008 FAM230AA0A1W2PPH8 454 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 MEGF11A6BM72 1044 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 NUDT21O43809 227 aaKnown RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 IGHV3-9P01782 118 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ATP1B1P05026 303 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ERCC1P07992 297 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 DCXRQ7Z4W1 244 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 HYLS1Q96M11 299 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ZNF578Q96N58 590 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms