RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669		A0A1B0GVT2	93 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ALG1L2	C9J202	215 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SULT1C2	O00338	296 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	RGS11	O94810	467 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ABHD16A	O95870	558 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CLPS	P04118	112 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CD2	P06729	351 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CD27	P26842	260 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	PTH2R	P49190	550 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ARL4D	P49703	201 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	AP2S1	P53680	142 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	P2RX3	P56373	397 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	NANOS3	P60323	173 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SNRPD2	P62316	118 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	MAT1A	Q00266	395 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SNTA1	Q13424	505 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SGCB	Q16585	318 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ZNF542P	Q5EBM4	170 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SLC18B1	Q6NT16	456 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	C17orf82	Q86X59	251 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ZNF761	Q86XN6	746 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	GLB1L2	Q8IW92	636 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CCDC28A	Q8IWP9	274 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	DTX3	Q8N9I9	347 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ZNF511	Q8NB15	262 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	ZNF248	Q8NDW4	579 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR2G2	Q8NGZ5	317 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR52I2	Q8NH67	350 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	OTOS	Q8NHW6	89 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	PTPMT1	Q8WUK0	201 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	METTL21A	Q8WXB1	218 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SLC25A38	Q96DW6	304 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	TMPRSS13	Q9BYE2	586 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CHRD	Q9H2X0	955 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SLCO5A1	Q9H2Y9	848 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SRA1	Q9HD15	236 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	CUTC	Q9NTM9	273 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	UPB1	Q9UBR1	384 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669	SLC23A1	Q9UHI7	598 aa		11.84	□□□□□ -0.51
CPSF7-223	ENST00000544669		A0A0A6YYH2	397 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669		A6NJ64	397 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR4C45	A6NMZ5	311 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	NDUFB5	O43674	189 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	GLS	O94925	669 aa	Predicted RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	RPP14	O95059	124 aa	Known RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	NDUFB6	O95139	128 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR6A2	O95222	327 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	CELA2B	P08218	269 aa	Predicted RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	SYP	P08247	313 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	ANKRD34C	P0C6C1	535 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR8G3P	P0DMU2	310 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	CRABP1	P29762	137 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	PPM1F	P49593	454 aa	Predicted RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	P2RX1	P51575	399 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.83	□□□□□ -0.51	1e-8	■■□□□ 12.8
CPSF7-223	ENST00000544669	LTB	Q06643	244 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	RBMS2	Q15434	407 aa	Known RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	CLLU1	Q5K131	121 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	ANKRD16	Q6P6B7	361 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OGFOD3	Q6PK18	319 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	DNM1P34	Q6PK57	102 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	APOOL	Q6UXV4	268 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	SLC29A4	Q7RTT9	530 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	PRSS45	Q7RTY3	260 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR11G2	Q8NGC1	345 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	OR6N2	Q8NGY6	317 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	STK35	Q8TDR2	534 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	TMEM234	Q8WY98	164 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	TTTY10	Q9BZA0	68 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	PNO1	Q9NRX1	252 aa	Known RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	LANCL2	Q9NS86	450 aa		11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	EIF3K	Q9UBQ5	218 aa	Known RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	ZNF107	Q9UII5	783 aa	Predicted RBP	11.83	□□□□□ -0.51
CPSF7-223	ENST00000544669	KIAA0100	Q14667	2235 aa	Known RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669		A0A1W2PQ72	361 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669		H7C417	338 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ERVH48-1	M5A8F1	160 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	MAGEB4	O15481	346 aa	Predicted RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ICMT	O60725	284 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	TSC22D2	O75157	780 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	IGKV3-11	P04433	115 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	CD38	P28907	300 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	POLR2H	P52434	150 aa	Known RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	MAP2K6	P52564	334 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	MAZ	P56270	477 aa	Known RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	TAS2R20	P59543	309 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ACTB	P60709	375 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ACTG1	P63261	375 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	DHODH	Q02127	395 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ROM1	Q03395	351 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	COL9A2	Q14055	689 aa	Predicted RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	ERV3-1	Q14264	604 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	CD226	Q15762	336 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	GRK1	Q15835	563 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	NNAT	Q16517	81 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	GLT8D1	Q68CQ7	371 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	FAM198B	Q6UWH4	519 aa		11.83	□□□□□ -0.52
CPSF7-223	ENST00000544669	SYT9	Q86SS6	491 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms