RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, human

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-223	ENST00000542552	ZNF627	Q7L945	461 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NANOGNB	Q7Z5D8	188 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RNF148	Q8N7C7	305 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FAM169B	Q8N8A8	192 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	WFDC11	Q8NEX6	87 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TMEM171	Q8WVE6	324 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FAM162A	Q96A26	154 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ADAD1	Q96M93	576 aa	Known RBP	13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CISD1	Q9NZ45	108 aa	Known RBP	13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CRNN	Q9UBG3	495 aa	Predicted RBP	13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RPS6KA6	Q9UK32	745 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	USF3	Q68DE3	2245 aa		13.49	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NF1	P21359	2839 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552		A0A096LPE4	126 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552		A0A1W2PPZ6	126 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552		E7EQL1	145 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RNF13	O43567	381 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SERPINI2	O75830	405 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CD8A	P01732	235 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	UMPS	P11172	480 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IFNA8	P32881	189 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CDH11	P55287	796 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	BID	P55957	195 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RPL18	Q07020	188 aa	Known RBP	13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TRAM2	Q15035	370 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SPATS1	Q496A3	300 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SAMD4B	Q5PRF9	694 aa	Known RBP	13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PRSS57	Q6UWY2	283 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FKBP9P1	Q75LS8	142 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FAM156A	Q8NDB6	213 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RBM15B	Q8NDT2	890 aa	Known RBP	13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TMEM54	Q969K7	222 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	BPIFA2	Q96DR5	249 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	C7orf34	Q96L11	122 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CDRT15	Q96T59	188 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FNDC11	Q9BVV2	318 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	GRIP2	Q9C0E4	1043 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	DLL4	Q9NR61	685 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RHCG	Q9UBD6	479 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	LAMP3	Q9UQV4	416 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ENPP4	Q9Y6X5	453 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ZAN	Q9Y493	2812 aa		13.48	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SETD2	Q9BYW2	2564 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ZFHX3	Q15911	3703 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IGHV1-18	A0A0C4DH31	117 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	BLOC1S5-TXNDC5	H3BN57	136 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PIP5K1C	O60331	668 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IGLV1-44	P01699	117 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	AQP2	P41181	271 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PTH2R	P49190	550 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	MNAT1	P51948	309 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	UBE2N	P61088	152 aa	Known RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PRKCD	Q05655	676 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FOXD4	Q12950	439 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	HIST3H3	Q16695	136 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IQCC	Q4KMZ1	466 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SLC22A25	Q6T423	547 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	B3GLCT	Q6Y288	498 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	DTX2	Q86UW9	622 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RNF113B	Q8IZP6	322 aa	Known RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FAM86B1	Q8N7N1	296 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	OR6N1	Q8NGY5	312 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ACOT11	Q8WXI4	607 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SLC25A44	Q96H78	314 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SLC38A2	Q96QD8	506 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SEPHS2	Q99611	448 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ANKRD19P	Q9H560	264 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CXorf56	Q9H5V9	222 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NMNAT1	Q9HAN9	279 aa	Predicted RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	MOV10	Q9HCE1	1003 aa	Known RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	B3GAT2	Q9NPZ5	323 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NDE1	Q9NXR1	346 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NDUFAF4	Q9P032	175 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	SAMD4A	Q9UPU9	718 aa	Known RBP	13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	HIF3A	Q9Y2N7	669 aa		13.47	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NIPBL	Q6KC79	2804 aa	eCLIP	13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552		A0A087WUU8	490 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ZNF503-AS2	A6NEH8	195 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NPIPB13	A6NJU9	1138 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NPIPB4	C9JG80	1138 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	ARHGEF9	O43307	516 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IGKV3-15	P01624	115 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PGA4	P0DJD7	388 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	PGA3	P0DJD8	388 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	IFI30	P13284	250 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CD99	P14209	185 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	MAK	P20794	623 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CSNK1A1	P48729	337 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	RPS4X	P62701	263 aa	Known RBP	13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TUBA1B	P68363	451 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TUBA4A	P68366	448 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	FHL1	Q13642	323 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	LRFN4	Q6PJG9	635 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	C16orf89	Q6UX73	402 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	TUBA1A	Q71U36	451 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	NRM	Q8IXM6	262 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	CCDC36	Q8IYA8	594 aa		13.46	□□□□□ -0.25
ECHDC2-223	ENST00000542552	DEFB107A	Q8IZN7	70 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms