RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IL1RL1Q01638 556 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 SLC35D2Q76EJ3 337 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 YTHDF3Q7Z739 585 aaKnown RBP12.37□□□□□ -0.43
USP28-209ENST00000540925 PIAS4Q8N2W9 510 aaPredicted RBP12.37□□□□□ -0.43
USP28-209ENST00000540925 GEMIN6Q8WXD5 167 aaKnown RBP12.37□□□□□ -0.43
USP28-209ENST00000540925 TMEM54Q969K7 222 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 ADAD1Q96M93 576 aaKnown RBP12.37□□□□□ -0.43
USP28-209ENST00000540925 DHRS9Q9BPW9 319 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 KCTD14Q9BQ13 255 aaPredicted RBP12.37□□□□□ -0.43
USP28-209ENST00000540925 ARL8BQ9NVJ2 186 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 B3GNT2Q9NY97 397 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 A0A096LPE4 126 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 A0A1W2PPZ6 126 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 HTR3EA5X5Y0 456 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 C11orf98E9PRG8 122 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 J3KTA2 159 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 M0R3G1 203 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 SERPINA1P01009 418 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 IFNW1P05000 195 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 PGA4P0DJD7 388 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 PGA3P0DJD8 388 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 NCK1P16333 377 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 TTKP33981 857 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 BIDP55957 195 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 RPL18Q07020 188 aaKnown RBP12.36□□□□□ -0.43
USP28-209ENST00000540925 ST3GAL3Q11203 375 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 CAMK2DQ13557 499 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 FHL1Q13642 323 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 HIST3H3Q16695 136 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 IFI44LQ53G44 452 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 CARD17Q5XLA6 110 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 SLC22A25Q6T423 547 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 KLHL24Q6TFL4 600 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 DNM1P46Q6ZS02 220 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 MYPOPQ86VE0 399 aaPredicted RBP12.36□□□□□ -0.43
USP28-209ENST00000540925 SGTBQ96EQ0 304 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 HSH2DQ96JZ2 352 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 ZNF75AQ96N20 296 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 SLC38A2Q96QD8 506 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 KATNB1Q9BVA0 655 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 MRPL13Q9BYD1 178 aaKnown RBP12.36□□□□□ -0.43
USP28-209ENST00000540925 SEC61A2Q9H9S3 476 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 MOV10Q9HCE1 1003 aaKnown RBP12.36□□□□□ -0.43
USP28-209ENST00000540925 FAM53CQ9NYF3 392 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 ZNF224Q9NZL3 707 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 CD300AQ9UGN4 299 aa12.36□□□□□ -0.43
USP28-209ENST00000540925 NPIPB13A6NJU9 1138 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 NPIPB4C9JG80 1138 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 ATP6V1G2-DDX39BF2Z307 99 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 GSTA4O15217 222 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 RNF13O43567 381 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 PIP5K1CO60331 668 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 ZNF682O95780 498 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 HSD17B1P14061 328 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 CBR1P16152 277 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 FUT1P19526 365 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 ZNF133P52736 654 aaPredicted RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 UBE2NP61088 152 aaKnown RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 TUBA1BP68363 451 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 TUBA4AP68366 448 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 IQCCQ4KMZ1 466 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 ZNF544Q6NX49 715 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 LRFN4Q6PJG9 635 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 TUBA1AQ71U36 451 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 NANOGNBQ7Z5D8 188 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 CCDC36Q8IYA8 594 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 RBM15BQ8NDT2 890 aaKnown RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 SLC25A44Q96H78 314 aaPredicted RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 COX4I2Q96KJ9 171 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 C7orf34Q96L11 122 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 LRRC37BQ96QE4 947 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 GORASP2Q9H8Y8 452 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 DCAF13Q9NV06 445 aaKnown RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 FAIMQ9NVQ4 179 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 GLTPQ9NZD2 209 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 TAGLN3Q9UI15 199 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 HIF3AQ9Y2N7 669 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 MED31Q9Y3C7 131 aa12.35□□□□□ -0.43
USP28-209ENST00000540925 HEATR1Q9H583 2144 aaKnown RBP12.35□□□□□ -0.43
USP28-209ENST00000540925 NSD1Q96L73 2696 aaPredicted RBP12.34□□□□□ -0.43
USP28-209ENST00000540925 ZNF726A6NNF4 738 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CENPBD1B2RD01 187 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 SERPINI2O75830 405 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 DCTN3O75935 186 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 OR6A2O95222 327 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 SEMG1P04279 462 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 HIST1H2ABP04908 130 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CECR9P0C854 216 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CALCRP30988 508 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CDKN1AP38936 164 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 AQP2P41181 271 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 YAP1P46937 504 aaKnown RBP12.34□□□□□ -0.43
USP28-209ENST00000540925 CSNK1A1P48729 337 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 NAAAQ02083 359 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 PRKCDQ05655 676 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 RUNX1T1Q06455 604 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 ARMC4Q5T2S8 1044 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 HIST3H2AQ7L7L0 130 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 PGAM4Q8N0Y7 254 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CIARTQ8N365 385 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms