RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 MEX3BQ6ZN04 569 aaKnown RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SSX7Q7RTT5 188 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 MAML2Q8IZL2 1156 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 OR4E2Q8NGC2 313 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SPRYD4Q8WW59 207 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 FGF11Q92914 225 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 PIK3IP1Q96FE7 263 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 PPP1R16AQ96I34 528 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SLC25A31Q9H0C2 315 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 CHST8Q9H2A9 424 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 KCNE5Q9UJ90 142 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TCFL5Q9UL49 500 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TMED3Q9Y3Q3 217 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 ATG4BQ9Y4P1 393 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 MTCH2Q9Y6C9 303 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 CCDC85CA6NKD9 419 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TRDCB7Z8K6 153 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SLC25A4P12235 298 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TYRP1P17643 537 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TAGLN2P37802 199 aaKnown RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 IFNGR2P38484 337 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 MTNR1AP48039 350 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 NOVA1P51513 510 aaKnown RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TPI1P60174 286 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 ERVFC1-1P60608 527 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SRSF5Q13243 272 aaKnown RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 HMGN3Q15651 99 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 UBE2V2Q15819 145 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SLC25A30Q5SVS4 291 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 PRAMEF8Q5VWM4 474 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 PRAMEF7Q5VXH5 474 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 ZNF529Q6P280 563 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 KIRREL2Q6UWL6 708 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 DRAM2Q6UX65 266 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 TMPRSS11BQ86T26 416 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 RGL4Q8IZJ4 473 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 HORMAD2Q8N7B1 307 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 C12orf76Q8N812 135 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-214ENST00000540539 NUDT11Q96G61 164 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 MICU1Q9BPX6 476 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 RGCCQ9H4X1 137 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 GPATCH2Q9NW75 528 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SUSD2Q9UGT4 822 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 SLCO1B1Q9Y6L6 691 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 COLEC10Q9Y6Z7 277 aa8.67□□□□□ -1.02
CLIP1-214ENST00000540539 CKAP5Q14008 2032 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 GABARAPH6UMI1 98 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 REM1O75628 298 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR2C1O95371 312 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 CLDN9O95484 217 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 MT-ND5P03915 603 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 IL6RP08887 468 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 TPT1P13693 172 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 HOXA11P31270 313 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 BRS3P32247 399 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 IDH3GP51553 393 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 AIMP2Q13155 320 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 ZNF234Q14588 700 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 FBXO47Q5MNV8 452 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PRAMEF14Q5SWL7 426 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 KHDRBS2Q5VWX1 349 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 EEF1DP3Q658K8 133 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 ADNP2Q6IQ32 1131 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 MPZL3Q6UWV2 235 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 BTNL3Q6UXE8 466 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 C16orf59Q7L2K0 433 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 KMT5CQ86Y97 462 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PAQR4Q8N4S7 273 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 C1orf127Q8N9H9 656 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR5T1Q8NG75 326 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR1J1Q8NGS3 322 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR4C6Q8NH72 309 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PPCDCQ96CD2 204 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 RRNAD1Q96FB5 475 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 BOD1Q96IK1 185 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 AARSD1Q9BTE6 412 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 ELOVL1Q9BW60 279 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 ZNF350Q9GZX5 532 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR2AG1Q9H205 316 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PADI1Q9ULC6 663 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 SIRT4Q9Y6E7 314 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 TET1Q8NFU7 2136 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 IRGMA1A4Y4 181 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 NKX6-3A6NJ46 265 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 F8VVB4 439 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 F8VWA3 439 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PRODHO43272 600 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 SELPP16109 830 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 RPL29P47914 159 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 AFF3P51826 1226 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PDX1P52945 283 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 GEMP55040 296 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 EIF5AP63241 154 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 ZP2Q05996 745 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 MRPL49Q13405 166 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 FZD5Q13467 585 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 RHEBQ15382 184 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 SLC25A52Q3SY17 297 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 OR2T2Q6IF00 324 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 FAHD2BQ6P2I3 314 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms