RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	NFYC	Q13952	458 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF74	Q16587	644 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	VMAC	Q2NL98	169 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	INTS11	Q5TA45	600 aa	Known RBP	11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	NANOGP8	Q6NSW7	305 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	MDP1	Q86V88	176 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	RBM45	Q8IUH3	476 aa	Known RBP	11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	OR10A6	Q8NH74	314 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	OR6X1	Q8NH79	312 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	RASSF5	Q8WWW0	418 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	TMEM54	Q969K7	222 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	THOC1	Q96FV9	657 aa	Known RBP	11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	MPP4	Q96JB8	637 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	PRSS27	Q9BQR3	290 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	EMC6	Q9BV81	110 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	NANOG	Q9H9S0	305 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	YAE1D1	Q9NRH1	226 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	MED29	Q9NX70	200 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF224	Q9NZL3	707 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475	FKBP7	Q9Y680	259 aa		11.35	□□□□□ -0.59
SEMA4D-223	ENST00000540475		A0A0G2JND7	137 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	LOC390937	A0A1W2PQ73	354 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	TRAPPC13	A5PLN9	417 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF726	A6NNF4	738 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	FXYD1	O00168	92 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	LY6H	O94772	140 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	OPN1SW	P03999	348 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	TSPAN19	P0C672	248 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ASAH2B	P0C7U1	165 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF35	P13682	527 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF14	P17017	642 aa	Predicted RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	USF1	P22415	310 aa	Predicted RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	THBS4	P35443	961 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	NR4A2	P43354	598 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	EVX1	P49640	407 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	PDLIM4	P50479	330 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	IDH3G	P51553	393 aa	Predicted RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	CYLC2	Q14093	348 aa	Predicted RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	TRMT5	Q32P41	509 aa	Known RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	TTC33	Q6PID6	262 aa	Predicted RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	SNX32	Q86XE0	403 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	OR8J3	Q8NGG0	315 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	SPATA3	Q8NHX4	192 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	LRRC58	Q96CX6	371 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	SH3GL1	Q99961	368 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	POLR2J2	Q9GZM3	115 aa	Known RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	POLR2J3	Q9H1A7	115 aa	Known RBP	11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	B3GAT2	Q9NPZ5	323 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	ZNF229	Q9UJW7	825 aa		11.34	□□□□□ -0.59
SEMA4D-223	ENST00000540475	CPSF4L	A6NMK7	179 aa	Known RBP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	VSTM5	A8MXK1	200 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ADORA3	P0DMS8	318 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	IGHV4-31	P0DP07	118 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NPR2	P20594	1047 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NR4A1	P22736	598 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	GIF	P27352	417 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	LSM11	P83369	360 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CAMK2D	Q13557	499 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HIST3H3	Q16695	136 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	GSG1	Q2KHT4	349 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CYB5R2	Q6BCY4	276 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PODNL1	Q6PEZ8	512 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CXXC5	Q7LFL8	322 aa	Known RBP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PIWIL3	Q7Z3Z3	882 aa	Known RBP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NEU4	Q8WWR8	484 aa	Predicted RBP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	LIPH	Q8WWY8	451 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF583	Q96ND8	569 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SEPHS2	Q99611	448 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	TMEM120A	Q9BXJ8	343 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NOX3	Q9HBY0	568 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MEPE	Q9NQ76	525 aa	Predicted RBP	11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NANS	Q9NR45	359 aa		11.33	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CENPBD1	B2RD01	187 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HLA-H	P01893	362 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	IFNGR1	P15260	489 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	AHCY	P23526	432 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	THBS2	P35442	1172 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	GLRX	P35754	106 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF133	P52736	654 aa	Predicted RBP	11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	IL1RL1	Q01638	556 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	KLF10	Q13118	480 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FXN	Q16595	210 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CHRFAM7A	Q494W8	412 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NRN1L	Q496H8	165 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CARD17	Q5XLA6	110 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CGB2	Q6NT52	195 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	LRFN4	Q6PJG9	635 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF813	Q6ZN06	617 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC35D2	Q76EJ3	337 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC46A3	Q7Z3Q1	461 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	LRRC17	Q8N6Y2	441 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF540	Q8NDQ6	660 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RNF217	Q8TC41	542 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC25A44	Q96H78	314 aa	Predicted RBP	11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FOXN4	Q96NZ1	517 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FOXB1	Q99853	325 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ULBP2	Q9BZM5	246 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RAB1B	Q9H0U4	201 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SAR1A	Q9NR31	198 aa		11.32	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms