RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 KLHL12Q53G59 568 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 BICRALQ6AI39 1079 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 GDPGP1Q6ZNW5 385 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF485Q8NCK3 441 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF563Q8TA94 476 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 S100ZQ8WXG8 99 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 KISS1RQ969F8 398 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 DACH2Q96NX9 599 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ERMAPQ96PL5 475 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 SECISBP2Q96T21 854 aaKnown RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF649Q9BS31 505 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 TMEM43Q9BTV4 400 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 JAM3Q9BX67 310 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 MMP27Q9H306 513 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ISYNA1Q9NPH2 558 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ERVK13-1Q9NX77 482 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CCDC59Q9P031 241 aaKnown RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 PLEKHB1Q9UF11 243 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CHRNA9Q9UGM1 479 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF337Q9Y3M9 751 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF407Q9C0G0 2248 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 TACC2O95359 2948 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 A0A1B0GTH9 108 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 HTR3EA5X5Y0 456 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 METTL15A6NJ78 407 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 MCIDASD6RGH6 385 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 GMFGO60234 142 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 IFNGP01579 166 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 IDUAP35475 653 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 NRG3P56975 720 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 FBXW4P57775 412 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 DBPQ10586 325 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 FOXO1Q12778 655 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF846Q147U1 533 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 KRTCAP3Q53RY4 240 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ARMC4Q5T2S8 1044 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 C16orf87Q6PH81 154 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 IGFN1Q86VF2 1251 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 GPALPP1Q8IXQ4 340 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 KLHL36Q8N4N3 616 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CYB561A3Q8NBI2 242 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 SLC22A8Q8TCC7 542 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 TP53INP1Q96A56 240 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 SGCZQ96LD1 299 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 TTTY12Q9BZ98 90 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 WDR12Q9GZL7 423 aaKnown RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 OR51V1Q9H2C8 321 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 PROK2Q9HC23 129 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 SH2D2AQ9NP31 389 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CHCHD2Q9Y6H1 151 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ALPK2Q86TB3 2170 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 PNMA8CA0A1B0GUJ8 204 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CCDC182A6NF36 153 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 OR6C70A6NIJ9 312 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 SLC22A31A6NKX4 558 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 C17orf51A8MQB3 221 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CCL21O00585 134 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 FADS1O60427 444 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 EIF4E2O60573 245 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 IGF2P01344 180 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 P04436 131 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CELA3AP09093 270 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 FBXO45P0C2W1 286 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CNR1P21554 472 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 SLC2A5P22732 501 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 TACR3P29371 465 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 EVI2BP34910 448 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 RPL4P36578 427 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 SLC16A1P53985 500 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 RPS7P62081 194 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 RPS4XP62701 263 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 PPIAP62937 165 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 PLGLB1Q02325 96 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 TPBGQ13641 420 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 GXYLT1Q4G148 440 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CCDC92Q53HC0 331 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 GHDCQ8N2G8 530 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 ITPKCQ96DU7 683 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 TRMT61AQ96FX7 289 aaKnown RBP10.73□□□□□ -0.69
CLIP1-208ENST00000537004 COX4I2Q96KJ9 171 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 TEAD3Q99594 435 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 CDADC1Q9BWV3 514 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 ADAM19Q9H013 955 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 PALMDQ9NP74 551 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 SACM1LQ9NTJ5 587 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 SSR3Q9UNL2 185 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 IER3IP1Q9Y5U9 82 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 A3GALT2U3KPV4 340 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 LRBAP50851 2863 aa10.73□□□□□ -0.69
CLIP1-208ENST00000537004 C12orf71A8MTZ7 269 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 SCO2O43819 266 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 NUDT14O95848 222 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 RFPL3SP0C7P2 107 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 CLUP10909 449 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 BMP4P12644 408 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 HIST1H1CP16403 213 aaKnown RBP10.72□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF12P17014 697 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 CA7P43166 264 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 MAGEA5P43359 124 aa10.72□□□□□ -0.69
CLIP1-208ENST00000537004 EGR4Q05215 589 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms