RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ZFP90Q8TF47 636 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 SLC41A3Q96GZ6 507 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 TSNARE1Q96NA8 513 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 RIOK1Q9BRS2 568 aaKnown RBP2.49□□□□□ -2.01
CD44-215ENST00000525241 PPA2Q9H2U2 334 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 UGT1A7Q9HAW7 530 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 UGT1A10Q9HAW8 530 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 UGT1A8Q9HAW9 530 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 ADAP2Q9NPF8 381 aa2.49□□□□□ -2.01
CD44-215ENST00000525241 ZNF282Q9UDV7 671 aaPredicted RBP2.49□□□□□ -2.01
CD44-215ENST00000525241 NFASCO94856 1347 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 SNTNA6NMZ2 147 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 ERVV-1B6SEH8 477 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 H3BNH8 94 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 XKRYO14609 159 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 TIMM8AO60220 97 aaPredicted RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 MTX2O75431 263 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 OR7A10O76100 309 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 IGHV2-5P01817 119 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 BGLAPP02818 100 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 FGF1P05230 155 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 ZDHHC11BP0C7U3 371 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 SMIM10L1P0DMW3 83 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 TCN1P20061 433 aaPredicted RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 OMGP23515 440 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 CD1CP29017 333 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 GPR6P46095 362 aaPredicted RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 AQP6Q13520 282 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 LINC00483Q53H64 154 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 FAM71E1Q6IPT2 247 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 TRIM40Q6P9F5 258 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 LINC00173Q6ZV60 143 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 LRRC75A-AS1Q8N1F1 130 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 RSPH1Q8WYR4 309 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 EXOSC8Q96B26 276 aaKnown RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 SMIM10Q96HG1 83 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 PSKH2Q96QS6 385 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 TRIM62Q9BVG3 475 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 SCRT1Q9BWW7 348 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 MRPL47Q9HD33 250 aaKnown RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 TM9SF3Q9HD45 589 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 PACSIN2Q9UNF0 486 aaPredicted RBP2.48□□□□□ -2.01
CD44-215ENST00000525241 MSH6P52701 1360 aa2.48□□□□□ -2.01
CD44-215ENST00000525241 ZNFX1Q9P2E3 1918 aaKnown RBP2.47□□□□□ -2.01
CD44-215ENST00000525241 A0A1B0GVI7 797 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 TLX1NBP0CAT3 122 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 UBE2AP49459 152 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 SUB1P53999 127 aaKnown RBP eCLIP2.47□□□□□ -2.01
CD44-215ENST00000525241 OGDHQ02218 1023 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 GPM6BQ13491 265 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 ZBED5Q49AG3 693 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 Q6ZR03 302 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 H2AFVQ71UI9 128 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 ZNF561Q8N587 486 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 FAM86B1Q8N7N1 296 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 ZNF557Q8N988 423 aaPredicted RBP2.47□□□□□ -2.01
CD44-215ENST00000525241 TRIM44Q96DX7 344 aaPredicted RBP2.47□□□□□ -2.01
CD44-215ENST00000525241 OR8B4Q96RC9 309 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 SORT1Q99523 831 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 VCX2Q9H322 139 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 NMRAL1Q9HBL8 299 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 SLC40A1Q9NP59 571 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 INPP5EQ9NRR6 644 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 CEMIPQ8WUJ3 1361 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 WDR62O43379 1518 aa2.47□□□□□ -2.01
CD44-215ENST00000525241 CDHR2Q9BYE9 1310 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 A0A1B0GVL5 298 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 MGRN1O60291 552 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 TSPAN12O95859 305 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 SLC2A5P22732 501 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 YAP1P46937 504 aaKnown RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 GYG1P46976 350 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 NCBP2P52298 156 aaKnown RBP eCLIP2.46□□□□□ -2.02
CD44-215ENST00000525241 KRTAP10-10P60014 251 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 RPS21P63220 83 aaKnown RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 MRPL28Q13084 256 aaKnown RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 MOBPQ13875 183 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 ZNF77Q15935 545 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 TTLL9Q3SXZ7 439 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 OR2A2Q6IF42 318 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 PMF1Q6P1K2 205 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 LRRC31Q6UY01 552 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 PPP1R42Q7Z4L9 355 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 ABHD12BQ7Z5M8 362 aaPredicted RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 OR1L4Q8NGR5 311 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 UBALD1Q8TB05 177 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 GEMIN6Q8WXD5 167 aaKnown RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 SGK3Q96BR1 496 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 BMFQ96LC9 184 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 PANX2Q96RD6 677 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 CNN2Q99439 309 aaKnown RBP2.46□□□□□ -2.02
CD44-215ENST00000525241 FMO2Q99518 471 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 GABARAPL3Q9BY60 117 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 ANKRD19PQ9H560 264 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 AZI2Q9H6S1 392 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 CLEC4AQ9UMR7 237 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 PIGLQ9Y2B2 252 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 N6AMT1Q9Y5N5 214 aa2.46□□□□□ -2.02
CD44-215ENST00000525241 MROH7-TTC4A0A0A0MT08 1334 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms