RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 TAMM41Q96BW9 452 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 LRRC58Q96CX6 371 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 PIMREGQ9BSJ6 248 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 SLC19A3Q9BZV2 496 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 RAB1BQ9H0U4 201 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 GID8Q9NWU2 228 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 BAG5Q9UL15 447 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 SPEF1Q9Y4P9 236 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 ABCA2Q9BZC7 2435 aa11.87□□□□□ -0.51
TCOF1-215ENST00000515516 NAV3Q8IVL0 2385 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 FBP2O00757 339 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 MRASO14807 208 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 RAB36O95755 333 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 HLA-HP01893 362 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 CELA3BP08861 270 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 IFNGR1P15260 489 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 NPR2P20594 1047 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 USF1P22415 310 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-215ENST00000515516 BIDP55957 195 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 TAS2R41P59536 307 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 PIGFQ07326 219 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 ZP4Q12836 540 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 SF3A3Q12874 501 aaKnown RBP eCLIP11.86□□□□□ -0.51
TCOF1-215ENST00000515516 KLF10Q13118 480 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 DAG1Q14118 895 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 EFNB3Q15768 340 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF74Q16587 644 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 GSG1Q2KHT4 349 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 TMEM249Q2WGJ8 235 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 SLC35D2Q76EJ3 337 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 DENND2DQ9H6A0 471 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF442Q9H7R0 627 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 MYOZ1Q9NP98 299 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-215ENST00000515516 FGFR1OP2Q9NVK5 253 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF229Q9UJW7 825 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 SH3GLB1Q9Y371 365 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 CADP27708 2225 aa11.86□□□□□ -0.51
TCOF1-215ENST00000515516 IGHV2OR16-5A0A0B4J2B6 119 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 LOC100653049A0A140TA62 436 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 KIAA1324LA8MWY0 1029 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-215ENST00000515516 hCG_2039718K7EN88 272 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 NDUFS8O00217 210 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 GPRIN2O60269 458 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 KRT34O76011 436 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 LY6HO94772 140 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 IFNA2P01563 188 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 B4GALT1P15291 398 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 LSP1P33241 339 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 THBS4P35443 961 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 PPOXP50336 477 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 GZMMP51124 257 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 HGFACQ04756 655 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 HSP90B2PQ58FF3 399 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 RABL3Q5HYI8 236 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 CYB5R2Q6BCY4 276 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 REP15Q6BDI9 236 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 WDR88Q6ZMY6 472 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 SPATA21Q7Z572 469 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 NANOGNBQ7Z5D8 188 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 CARM1Q86X55 608 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF540Q8NDQ6 660 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 OR4D11Q8NGI4 311 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 OR6X1Q8NH79 312 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF566Q969W8 418 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 SORCS2Q96PQ0 1159 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 FOXB1Q99853 325 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 POLR2J2Q9GZM3 115 aaKnown RBP11.85□□□□□ -0.51
TCOF1-215ENST00000515516 PCDHAC1Q9H158 963 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 POLR2J3Q9H1A7 115 aaKnown RBP11.85□□□□□ -0.51
TCOF1-215ENST00000515516 PLK3Q9H4B4 646 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 SEC61A2Q9H9S3 476 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 DYNLRB1Q9NP97 96 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 SAR1AQ9NR31 198 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 FBXL3Q9UKT7 428 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 CMAHPQ9Y471 501 aa11.85□□□□□ -0.51
TCOF1-215ENST00000515516 FN1P02751 2386 aaKnown RBP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 LOC390937A0A1W2PQ73 354 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 BLOC1S5-TXNDC5H3BN57 136 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 UBL3O95164 117 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 BCL10O95999 233 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 IFNA8P32881 189 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 PTDSS1P48651 473 aaKnown RBP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 LSM11P83369 360 aaKnown RBP eCLIP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 VLDLRP98155 873 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 GALK2Q01415 458 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 SNTB2Q13425 540 aaKnown RBP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 GGTLC2Q14390 218 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 CHRFAM7AQ494W8 412 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 IQCCQ4KMZ1 466 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 GKAP1Q5VSY0 366 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 KRT80Q6KB66 452 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 NHLRC1Q6VVB1 395 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 DEF8Q6ZN54 512 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 ZNF627Q7L945 461 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 PIWIL3Q7Z3Z3 882 aaKnown RBP11.84□□□□□ -0.51
TCOF1-215ENST00000515516 CALHM3Q86XJ0 350 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 HIPK1Q86Z02 1210 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 SVOPLQ8N434 492 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 LRRC17Q8N6Y2 441 aa11.84□□□□□ -0.51
TCOF1-215ENST00000515516 ANKS4BQ8N8V4 417 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms