RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ATP6V1G2-DDX39BF2Z307 99 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 H0Y8X5 98 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 CTNSO60931 367 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 M6PRP20645 277 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 MFSD13AQ14CX5 517 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 PRSS53Q2L4Q9 553 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 TCTN1Q2MV58 587 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 CLLU1Q5K131 121 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 GLYATL3Q5SZD4 288 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 TMPRSS11FQ6ZWK6 438 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 STX12Q86Y82 276 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 OR51Q1Q8NH59 317 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 PTGES2Q9H7Z7 377 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 LRIT1Q9P2V4 623 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 NINQ8N4C6 2090 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 MEIKINA0A087WXM9 373 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 BORCS7-ASMTA0A0B4J1R7 106 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 H3BML4 177 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 PRICKLE3O43900 615 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 BRINP1O60477 761 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 GREM1O60565 184 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 PMS2P2O95744 297 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 KNG1P01042 644 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 EMDP50402 254 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 RAB5BP61020 215 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 CSNK2A1P68400 391 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 TNK1Q13470 666 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 TSC22D1Q15714 1073 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 AGBL4Q5VU57 503 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5M10Q6IEU7 315 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF585AQ6P3V2 769 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 TRAPPC6BQ86SZ2 158 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 C19orf47Q8N9M1 422 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 CSNK2A3Q8NEV1 391 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 CCL4L1Q8NHW4 92 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ST8SIA4Q92187 359 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM71F1Q96KD3 344 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 AIFM2Q9BRQ8 373 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 SEMA4CQ9C0C4 833 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 PPP1R3EQ9H7J1 279 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 FBXL4Q9UKA2 621 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ACAD8Q9UKU7 415 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A1W2PS29 197 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 BLACEA4D250 179 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 FADS1O60427 444 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 CRTAPO75718 401 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF28P17035 718 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 MAOAP21397 527 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 OR7A5Q15622 319 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 LINC00303Q3SY05 128 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 MANEAQ5SRI9 462 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 THSD4Q6ZMP0 1018 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 STAC2Q6ZMT1 411 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 TSEN54Q7Z6J9 526 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ABI3BPQ7Z7G0 1075 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5D14Q8NGL3 314 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF764Q96H86 408 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 HHIPL1Q96JK4 782 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 SORCS2Q96PQ0 1159 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 RGCCQ9H4X1 137 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 VDAC3Q9Y277 283 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 AGPAT2O15120 278 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 HYAL3O43820 417 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 UTS2O95399 124 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 IGHA1P01876 353 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 GLP1RP43220 463 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 DAP3P51398 398 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 P2RX1P51575 399 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 LUMP51884 338 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 CRYBA2P53672 197 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 ADPRHP54922 357 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 GSG1Q2KHT4 349 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2L13Q8N349 312 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 STK35Q8TDR2 534 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 PELI1Q96FA3 418 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC25A21Q9BQT8 299 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 POFUT1Q9H488 388 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 TAS2R5Q9NYW4 299 aa7.71□□□□□ -1.18
LIMCH1-216ENST00000512820 SNRPGP15A8MWD9 76 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 H7C417 338 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 GALR3O60755 368 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TGM6O95932 706 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 APOC1P02654 83 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 RPS27P42677 84 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF616Q08AN1 781 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 FGL2Q14314 439 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 SPIN3Q5JUX0 258 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 KIRREL2Q6UWL6 708 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 LYPD8Q6UX82 237 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5T2Q8NGG2 359 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 HOXB13Q92826 284 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 DDIT4LQ96D03 193 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 SDHCQ99643 169 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 WDR77Q9BQA1 342 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ST6GALNAC5Q9BVH7 336 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 EIF5A2Q9GZV4 153 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ADGRL4Q9HBW9 690 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 DLL4Q9NR61 685 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 MRPS18AQ9NVS2 196 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 POMT2Q9UKY4 750 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms