RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	ANKRD34A	Q69YU3	496 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	BEND4	Q6ZU67	534 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	CLDN22	Q8N7P3	220 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF610	Q8N9Z0	462 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	TEX47	Q8TBZ9	253 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	ASB10	Q8WXI3	467 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	OR2M2	Q96R28	347 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	GPX7	Q96SL4	187 aa	Predicted RBP	12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	RBM4B	Q9BQ04	359 aa	Known RBP	12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	C9orf16	Q9BUW7	83 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	RBM4	Q9BWF3	364 aa	Known RBP	12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	SMURF2	Q9HAU4	748 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	IL20	Q9NYY1	176 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	PRSS50	Q9UI38	385 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF346	Q9UL40	294 aa	Known RBP	12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	RRP15	Q9Y3B9	282 aa	Known RBP	12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	ADAM18	Q9Y3Q7	739 aa		12.89	□□□□□ -0.35
BRCA1-223	ENST00000494123	NKX2-6	A6NCS4	301 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	PPP1R3D	O95685	299 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	IGHM	P01871	453 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	OSM	P13725	252 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	IGFBP5	P24593	272 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	POU1F1	P28069	291 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	NOS3	P29474	1203 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ACVR1B	P36896	505 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	CLRN1	P58418	232 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	SRSF1	Q07955	248 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	TRIP10	Q15642	601 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	FAM205BP	Q63HN1	556 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	NHLRC1	Q6VVB1	395 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	POMGNT2	Q8NAT1	580 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	OR6N1	Q8NGY5	312 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	OR6X1	Q8NH79	312 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF566	Q969W8	418 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	SLC25A44	Q96H78	314 aa	Predicted RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF570	Q96NI8	536 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	TSPAN32	Q96QS1	320 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	TSSK6	Q9BXA6	273 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	PLA2G12A	Q9BZM1	189 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ENKD1	Q9H0I2	346 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	NRIP3	Q9NQ35	241 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	JKAMP	Q9P055	326 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ORC6	Q9Y5N6	252 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	IER3IP1	Q9Y5U9	82 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	WIPF3	A6NGB9	483 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123		A6NIZ1	184 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123		A8MXE2	369 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	XKRY	O14609	159 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	EI24	O14681	340 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF432	O94892	652 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	IGHG1	P01857	330 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	IGFBP1	P08833	259 aa	Predicted RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	EDNRA	P25101	427 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	SDHA	P31040	664 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	RAP1B	P61224	184 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	RAP1A	P62834	184 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	CDSN	Q15517	529 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	TSPO2	Q5TGU0	170 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	FBXW9	Q5XUX1	488 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	KDM4D	Q6B0I6	523 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	GPR139	Q6DWJ6	353 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZBTB49	Q6ZSB9	765 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	TMEM123	Q8N131	208 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	GPR137C	Q8N3F9	429 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	CBR4	Q8N4T8	237 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	MAGEE2	Q8TD90	523 aa	Predicted RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ERMAP	Q96PL5	475 aa	Predicted RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	RBM24	Q9BX46	236 aa	Known RBP	12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	B3GAT2	Q9NPZ5	323 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	REV1	Q9UBZ9	1251 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	ENOPH1	Q9UHY7	261 aa		12.88	□□□□□ -0.35
BRCA1-223	ENST00000494123	HELZ2	Q9BYK8	2649 aa	Known RBP	12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	TEX13C	A0A0J9YWL9	993 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123		M0R3G1	203 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	CNOT4	O95628	575 aa	Known RBP	12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ACADS	P16219	412 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	CSNK1A1	P48729	337 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	PPP2R2B	Q00005	443 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	FAP	Q12884	760 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	DAG1	Q14118	895 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ARMC4	Q5T2S8	1044 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF474	Q6S9Z5	364 aa	Predicted RBP	12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123		Q6ZT83	130 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	PARP8	Q8N3A8	854 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ARIH2OS	Q8N7S6	290 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	OR2T33	Q8NG76	320 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	OR8D4	Q8NGM9	314 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	RASD2	Q96D21	266 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123		Q96M85	177 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ALKBH3	Q96Q83	286 aa	Predicted RBP	12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	SLC7A10	Q9NS82	523 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ASB6	Q9NWX5	421 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	ELOVL5	Q9NYP7	299 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	MALT1	Q9UDY8	824 aa		12.87	□□□□□ -0.35
BRCA1-223	ENST00000494123	USP9X	Q93008	2570 aa	Predicted RBP	12.86	□□□□□ -0.35
BRCA1-223	ENST00000494123	FREM1	Q5H8C1	2179 aa		12.86	□□□□□ -0.35
BRCA1-223	ENST00000494123	CLEC18A	A5D8T8	446 aa		12.86	□□□□□ -0.35
BRCA1-223	ENST00000494123	ZNF587B	E7ETH6	402 aa		12.86	□□□□□ -0.35
BRCA1-223	ENST00000494123	SOCS2	O14508	198 aa		12.86	□□□□□ -0.35

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