RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 BORCS7-ASMTA0A0B4J1R7 106 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TMEM82A0PJX8 343 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 E9PI62 339 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 OIP5O43482 229 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 PLRG1O43660 514 aaKnown RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 CHRM4P08173 479 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TMEM99Q8N816 258 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 CHAC2Q8WUX2 184 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 MARC2Q969Z3 335 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 PLEKHB1Q9UF11 243 aaPredicted RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC35E2P0CK97 266 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 PRPH2P23942 346 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 HYAL1Q12794 435 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 RPL22L1Q6P5R6 122 aaKnown RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF417Q8TAU3 575 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 PDCD1LG2Q9BQ51 273 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 KIF25Q9UIL4 384 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 POMT2Q9UKY4 750 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 SRPK3Q9UPE1 567 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TRAV20A0A0B4J274 112 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TEAD1P28347 426 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 EEF1A1P5Q5VTE0 462 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 Q6ZS52 159 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 CLRN3Q8NCR9 226 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 GCDHQ92947 438 aaPredicted RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 MICU1Q9BPX6 476 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 GGT3PA6NGU5 568 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 H7C1C5 153 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 LCN6P62502 163 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 WDSUB1Q8N9V3 476 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 BBS1Q8NFJ9 593 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 FOXRED1Q96CU9 486 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SENP5Q96HI0 755 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ARL5BQ96KC2 179 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 KCNE1BA0A087WTH5 132 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 TTLL8A6PVC2 850 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF264O43296 627 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 WNT3P56703 355 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 CYCSP99999 105 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 KCNAB1Q14722 419 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 LAIR2Q6ISS4 152 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC18B1Q6NT16 456 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 MED25Q71SY5 747 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 DUSP18Q8NEJ0 188 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 OR10R2Q8NGX6 335 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SDF2Q99470 211 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 MIXL1Q9H2W2 232 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 AUNIPQ9H7T9 357 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 LIN7BQ9HAP6 207 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 REV1Q9UBZ9 1251 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 KLF15Q9UIH9 416 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC6A14Q9UN76 642 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 OR2W5A6NFC9 320 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SULT1C2O00338 296 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF593O00488 134 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SULT1B1O43704 296 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 IFNGR1P15260 489 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 MESP2Q0VG99 397 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 OR7A5Q15622 319 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 FAM74A1Q5RGS3 127 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 C9orf62Q8N4C0 152 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 BPIFB2Q8N4F0 458 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 AMER3Q8N944 861 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 DVL3Q92997 716 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 LRRC3BQ96PB8 259 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 FOXQ1Q9C009 403 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 STRADBQ9C0K7 418 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ISYNA1Q9NPH2 558 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 MAN2C1Q9NTJ4 1040 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ZDBF2Q9HCK1 2354 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 A0A0B4J2A0 478 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 CXorf51AA0A1B0GTR3 108 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 GPRIN2O60269 458 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC16A7O60669 478 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ZP3P21754 424 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 DRD3P35462 400 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC6A8P48029 635 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 CAMLGP49069 296 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 GPR85P60893 370 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 WBP2NLQ6ICG8 309 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 TDHQ8IZJ6 230 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 PNPLA2Q96AD5 504 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 LMF2Q9BU23 707 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SHPKQ9UHJ6 478 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF281Q9Y2X9 895 aa14.99□□□□□ -0.01
CCDC88B-209ENST00000494080 SERINC4A6NH21 518 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OTOL1A6NHN0 477 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR6C65A6NJZ3 312 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 CTNSO60931 367 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR8G3PP0DMU2 310 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 RAB6AP20340 208 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 FPR3P25089 353 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR1D5P58170 312 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 VAMP2P63027 116 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 RAE1P78406 368 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 PDZK1IP1Q13113 114 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 TNK1Q13470 666 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 LAIR1Q6GTX8 287 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF836Q6ZNA1 936 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 PXKQ7Z7A4 578 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms