RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TMED7-TICAM2A0A0A6YYA0 188 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 GNG14A0A1W2PPG7 69 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ZNF879B4DU55 563 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TMEM178BH3BS89 294 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 AP3D1O14617 1153 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 FCMRO60667 390 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TPPPO94811 219 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TOX4O94842 621 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 MFN2O95140 757 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 DUS4LO95620 317 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 BPNT1O95861 308 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 CHRM4P08173 479 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 B4GALT1P15291 398 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TSPAN8P19075 237 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 EFNA1P20827 205 aaPredicted RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 HSD3B2P26439 372 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 EPHA3P29320 983 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 PGM1P36871 562 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ELK3P41970 407 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 GATA4P43694 442 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 SERPINB4P48594 390 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 PITPNBP48739 271 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 FNTAP49354 379 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 CLK1P49759 484 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 VEGFCP49767 419 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ALDH18A1P54886 795 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 RAB1AP62820 205 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 CEACAM7Q14002 265 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 FASTKD3Q14CZ7 662 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 HEPACAMQ14CZ8 416 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 OR7A5Q15622 319 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 MAPK14Q16539 360 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TMEM95Q3KNT9 176 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ARHGAP11BQ3KRB8 267 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 VPS26BQ4G0F5 336 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 GGTA1PQ4G0N0 100 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 SPATA46Q5T0L3 261 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 DCST2Q5T1A1 773 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TTC19Q6DKK2 380 aaPredicted RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 ANKRD26P1Q6NSI1 321 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 SLC27A4Q6P1M0 643 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 EMBQ6PCB8 327 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 Q6ZR03 302 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ZNF627Q7L945 461 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 GRINAQ7Z429 371 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 COMTD1Q86VU5 262 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 VSTM4Q8IW00 320 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 MRPL41Q8IXM3 137 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 Q8N2B8 174 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 PNKDQ8N490 385 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 MMGT1Q8N4V1 131 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ANKK1Q8NFD2 765 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 OR4C13Q8NGP0 309 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 OR2T6Q8NHC8 308 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 ZNF519Q8TB69 540 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 SELENOMQ8WWX9 145 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 THOC1Q96FV9 657 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 AJUBAQ96IF1 538 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 MAELQ96JY0 434 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 DDOQ99489 341 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 GPR22Q99680 433 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TMEM246Q9BRR3 403 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 NAA11Q9BSU3 229 aaPredicted RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 NAT10Q9H0A0 1025 aaKnown RBP3.9□□□□□ -1.79
USP4-209ENST00000475873 NANOGQ9H9S0 305 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 PPCSQ9HAB8 311 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 BRF2Q9HAW0 419 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TCF7L2Q9NQB0 619 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 VPS29Q9UBQ0 182 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 CTSZQ9UBR2 303 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 OSGIN1Q9UJX0 560 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 PCTPQ9UKL6 214 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TMED7Q9Y3B3 224 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 TEX264Q9Y6I9 313 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 DNAH6Q9C0G6 4158 aa3.9□□□□□ -1.79
USP4-209ENST00000475873 A0A1W2PRD5 423 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 A0A1W2PRF3 423 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 A0A1W2PRM7 423 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SLC22A23A1A5C7 686 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 CLDN24A6NM45 220 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 NPIPB8E9PQR5 432 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 H3BNH8 94 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 H3BUX3 64 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ENSAO43768 121 aaKnown RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 UGT2B17O75795 530 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SASH3O75995 380 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 CSTAP01040 98 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 PF4P02776 101 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 IFNW1P05000 195 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SERPINA5P05154 406 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 HMGN2P05204 90 aaKnown RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 LCKP06239 509 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 PF4V1P10720 104 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 NTSP30990 170 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 RYKP34925 604 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 WNT5AP41221 380 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 FRKP42685 505 aaPredicted RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 CCNG1P51959 295 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 UCP2P55851 309 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 CLDN17P56750 224 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms