RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 Q9HAA7 133 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 WDR41Q9HAD4 459 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 MEAF6Q9HAF1 191 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 PDFQ9HBH1 243 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 TM9SF3Q9HD45 589 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 IL37Q9NZH6 218 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 ADA2Q9NZK5 511 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 CCDC167Q9P0B6 97 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 RABL2AQ9UBK7 228 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS29-202ENST00000447578 PSMD13Q9UNM6 376 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 COL4A4P53420 1690 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 CITO14578 2027 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PDCD11Q14690 1871 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 LOC105371242A0A075B767 164 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 A0A0A6YYD4 124 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 NPIPA5A0A0B4J1W7 369 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PPIAL4CA0A0B4J2A2 164 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 FAM92AA1XBS5 289 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZSCAN5BA6NJL1 495 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 LRRC30A6NM36 301 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SUPT3HB4E1H0 165 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 NPIPA5E9PKD4 350 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PSMD12O00232 456 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 UBFD1O14562 309 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 MRASO14807 208 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CASKO14936 926 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CASQ2O14958 399 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 UBDO15205 165 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZNF208O43345 1280 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 KDELR3O43731 214 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SUPT3HO75486 399 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SRP72O76094 671 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 GJB5O95377 273 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 RHOCP08134 193 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PPIAL4GP0DN37 164 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 GFAPP14136 432 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CD1DP15813 335 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 HOXB8P17481 243 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 ATF6P18850 670 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 IMPDH1P20839 514 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 UQCRC2P22695 453 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 HOXD10P28358 340 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PDHA2P29803 388 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ATP5C1P36542 298 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 PEX19P40855 299 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SLC26A3P40879 764 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OPRL1P41146 370 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 RGRP47804 291 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PPT1P50897 306 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CRYBA2P53672 197 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CDH4P55283 916 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 C1QTNF8P60827 252 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 RPS24P62847 133 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 MRPS22P82650 360 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 XIAPP98170 497 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 MS4A2Q01362 244 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ACVR1Q04771 509 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 RAD51Q06609 339 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SMARCB1Q12824 385 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZP4Q12836 540 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 STX5Q13190 355 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZNF177Q13360 481 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 PLD1Q13393 1074 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 MED21Q13503 144 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PDK3Q15120 406 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CYTH1Q15438 398 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 TAF1AQ15573 450 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR4D1Q15615 310 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 MLF2Q15773 248 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 ECSCRQ19T08 205 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 TMEM30BQ3MIR4 351 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OGFRL1Q5TC84 451 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 TTC23Q5W5X9 447 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR52E8Q6IFG1 317 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZFP1Q6P2D0 407 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ARHGAP11AQ6P4F7 1023 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 LEG1Q6P5S2 330 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 Q6ZSR9 355 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 TAS2R42Q7RTR8 314 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 EFL1Q7Z2Z2 1120 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 DPY19L4Q7Z388 723 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 GLT6D1Q7Z4J2 308 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 UBQLNLQ8IYU4 475 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ST13P4Q8IZP2 240 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 SNX31Q8N9S9 440 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CATSPER1Q8NEC5 780 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR4F17Q8NGA8 305 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR5AU1Q8NGC0 362 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR4K2Q8NGD2 314 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR52B6Q8NGF0 335 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 BRSK1Q8TDC3 778 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 C2orf15Q8WU43 125 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 LHX4Q969G2 390 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 L3HYPDHQ96EM0 354 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 C19orf60Q96EN9 201 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 CNRIP1Q96F85 164 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 DCUN1D1Q96GG9 259 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 GMPPAQ96IJ6 420 aaPredicted RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms