RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ZNF587BE7ETH6 402 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 NXPH2O95156 264 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 HOXA1P49639 335 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-209ENST00000438120 NKX6-1P78426 367 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-209ENST00000438120 GPR176Q14439 515 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 DUSP5Q16690 384 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 PDLIM3Q53GG5 364 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-209ENST00000438120 PPT2Q9UMR5 302 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 EFSO43281 561 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 GRPP07492 148 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 KITLGP21583 273 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 PIGAP37287 484 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 CYB561P49447 251 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 HSD17B7P56937 341 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 DPY19L2P2Q6ZN68 376 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 GIMAP5Q96F15 307 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 DECR2Q9NUI1 292 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 NTNG1Q9Y2I2 539 aa15.84■□□□□ 0.13
PTPRF-209ENST00000438120 IGHV3-64DA0A0J9YX35 117 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 OR5K3A6NET4 321 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 PRAMEF25A6NGN4 478 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 SCG5P05408 212 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 ARNTP27540 789 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 STEAP1Q9UHE8 339 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 NXT1Q9UKK6 140 aaKnown RBP15.83■□□□□ 0.13
PTPRF-209ENST00000438120 FBXO7Q9Y3I1 522 aa15.83■□□□□ 0.13
PTPRF-209ENST00000438120 GOT1L1Q8NHS2 421 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-209ENST00000438120 RHOXF1Q8NHV9 184 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 RNF32Q9H0A6 362 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 COA3Q9Y2R0 106 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-209ENST00000438120 HS3ST3A1Q9Y663 406 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF814B7Z6K7 855 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 GPR137BO60478 399 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 APEX1P27695 318 aaKnown RBP15.83■□□□□ 0.12
PTPRF-209ENST00000438120 TEAD1P28347 426 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 MSMO1Q15800 293 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 NKAIN4Q8IVV8 208 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 OR4N2Q8NGD1 307 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 Q96M85 177 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 P2RY12Q9H244 342 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 SCGB2A2Q13296 93 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 EDDM3AQ14507 147 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 ALKAL2Q6UX46 152 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 CCL4L1Q8NHW4 92 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 CHST8Q9H2A9 424 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 EPHX3Q9H6B9 360 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 NGBQ9NPG2 151 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 FADS1O60427 444 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 F2RL1P55085 397 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 C1orf140Q5VVS0 124 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 MMACHCQ9Y4U1 282 aa15.83■□□□□ 0.12
PTPRF-209ENST00000438120 SLC22A23A1A5C7 686 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 HTR1FP30939 366 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 GPLD1P80108 840 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 ALKBH1Q13686 389 aaKnown RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 YRDCQ86U90 279 aaKnown RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 HRASLS5Q96KN8 279 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 HCCSP53701 268 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 GLYATL3Q5SZD4 288 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 OR6V1Q8N148 313 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 LIN37Q96GY3 246 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 LHX6Q9UPM6 363 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 TSFMP43897 325 aaKnown RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 VWA2Q5GFL6 755 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 RNLSQ5VYX0 342 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 OR51D1Q8NGF3 324 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 LANCL2Q9NS86 450 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 PIGLQ9Y2B2 252 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 K7EPK0 472 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 MSTNO14793 375 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 CHRNB1P11230 501 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 MMP11P24347 488 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF93P35789 620 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 RBMS2Q15434 407 aaKnown RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 PYCR3Q53H96 274 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 TMEM240Q5SV17 173 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 OR5AS1Q8N127 324 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 PELI3Q8N2H9 469 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 FAM71E2Q8N5Q1 922 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 FAM71CQ8NEG0 241 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 C8orf44Q96CB5 159 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 ATPIF1Q9UII2 106 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 ESCO2Q56NI9 601 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 SYT13Q7L8C5 426 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 MS4A6EQ96DS6 147 aa15.82■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF578Q96N58 590 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 NKX3-1Q99801 234 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-209ENST00000438120 A8MVM7 634 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 KLRC4-KLRK1H3BQV0 150 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 MRPS34P82930 218 aaKnown RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF169Q14929 603 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 EBPQ15125 230 aaKnown RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 SOWAHCQ53LP3 525 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 TMEM178AQ8NBL3 297 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 ZDHHC5Q9C0B5 715 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.81■□□□□ 0.123e-7■■■■■ 33.1
PTPRF-209ENST00000438120 TMEM71Q6P5X7 295 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 IFI44Q8TCB0 444 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 ELSPBP1Q96BH3 223 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 RBMXL1Q96E39 390 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms