RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 RASD2Q96D21 266 aa10.09□□□□□ -0.79
LINC00539-203ENST00000434601 Q96M85 177 aa10.09□□□□□ -0.79
LINC00539-203ENST00000434601 COPS4Q9BT78 406 aa10.09□□□□□ -0.79
LINC00539-203ENST00000434601 CCDC90BQ9GZT6 254 aa10.09□□□□□ -0.79
LINC00539-203ENST00000434601 FANCFQ9NPI8 374 aa10.09□□□□□ -0.79
LINC00539-203ENST00000434601 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.09□□□□□ -0.79
LINC00539-203ENST00000434601 TEP1Q99973 2627 aaKnown RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 A0A0J9YW62 118 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 A0A1B0GUH1 482 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 A0A1W2PRG6 482 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 IRGMA1A4Y4 181 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPB13A6NJU9 1138 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPB4C9JG80 1138 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 TNFSF11O14788 317 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 DNPH1O43598 174 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SERPINI2O75830 405 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 PLGP00747 810 aaPredicted RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 MT-ND2P03891 347 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 CDK1P06493 297 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 CELA3AP09093 270 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 HTR1FP30939 366 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SLC15A1P46059 708 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 NR1H2P55055 460 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 CSNK2A1P68400 391 aaPredicted RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 PIGFQ07326 219 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF169Q14929 603 aaPredicted RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF239Q16600 458 aaKnown RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 MESTQ5EB52 335 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF362Q5T0B9 420 aaPredicted RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 RPUSD3Q6P087 351 aaKnown RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 LEG1Q6P5S2 330 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 PAQR6Q6TCH4 344 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ESPNLQ6ZVH7 1005 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 PRSS48Q7RTY5 328 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ADCK1Q86TW2 530 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 GGNQ86UU5 652 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 JAZF1Q86VZ6 243 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SPARTQ8N0X7 666 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 STX19Q8N4C7 294 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SVOPQ8N4V2 548 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 CYB561A3Q8NBI2 242 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 BBS1Q8NFJ9 593 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 FAR1Q8WVX9 515 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 OTULINQ96BN8 352 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ZHX1-C8orf76Q96EF9 292 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SIGLEC11Q96RL6 698 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 SLC6A15Q9H2J7 730 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 TXNIPQ9H3M7 391 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 MED20Q9H944 212 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 VCX3AQ9NNX9 186 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 BATF3Q9NR55 127 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 H2AFY2Q9P0M6 372 aaPredicted RBP10.08□□□□□ -0.8
LINC00539-203ENST00000434601 ERVK-18Q9QC07 812 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 GRHPRQ9UBQ7 328 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 KIAA1549Q9HCM3 1950 aa10.08□□□□□ -0.8
LINC00539-203ENST00000434601 CCDC182A6NF36 153 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 SLC22A31A6NKX4 558 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 AQP7P3A6NL99 342 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPA5E9PKD4 350 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 MS4A18H0YCH9 400 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 EIF1AYO14602 144 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 LRRTM2O43300 516 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 SEC14L5O43304 696 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 EIF1BO60739 113 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 TFAP2AP05549 437 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 RPL5P46777 297 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 MTNR1AP48039 350 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 DAP3P51398 398 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 P2RY4P51582 365 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 CLDN20P56880 219 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 RPL27P61353 136 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 PMP22Q01453 160 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 POU3F1Q03052 451 aaPredicted RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 TMED1Q13445 227 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ACKR1Q16570 336 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 MS4A18Q3C1V0 323 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 FAM205BPQ63HN1 556 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 HBMQ6B0K9 141 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 FAM180AQ6UWF9 173 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 KCTD8Q6ZWB6 473 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 TRILQ7L0X0 811 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 PXKQ7Z7A4 578 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 UEVLDQ8IX04 471 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ARIH2OSQ8N7S6 290 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 TMEM99Q8N816 258 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 NPEPL1Q8NDH3 523 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 OR2V1Q8NHB1 315 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF519Q8TB69 540 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 RNFT2Q96EX2 444 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ADGRG7Q96K78 797 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 NMNAT3Q96T66 252 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 NAA11Q9BSU3 229 aaPredicted RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 HCAR1Q9BXC0 346 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ZDHHC11Q9H8X9 412 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ACKR4Q9NPB9 350 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 MRPS18AQ9NVS2 196 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 B3GAT1Q9P2W7 334 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF346Q9UL40 294 aaKnown RBP10.07□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPA1Q9UND3 350 aa10.07□□□□□ -0.8
LINC00539-203ENST00000434601 PCNX1Q96RV3 2341 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms