RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 C7orf66A4D0T2 115 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 KDM4EB2RXH2 506 aaPredicted RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 PEX12O00623 359 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 MT-ND4P03905 459 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 CXCL2P19875 107 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 GGT2P36268 569 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 GPR18Q14330 331 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 EIPR1Q53HC9 387 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 LAIR2Q6ISS4 152 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SLCO4C1Q6ZQN7 724 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 FUNDC1Q8IVP5 155 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SAMD12Q8N8I0 201 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 CD300LFQ8TDQ1 290 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 CAPN10Q9HC96 672 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 PRTFDC1Q9NRG1 225 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 TXNL4BQ9NX01 149 aaKnown RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 FBXL4Q9UKA2 621 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 PTPRDP23468 1912 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 AK1P00568 194 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SLC6A1P30531 599 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SELENOPP49908 381 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 HSD11B2P80365 405 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 B4GALNT1Q00973 533 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 ABRAXAS2Q15018 415 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 PLAG1Q6DJT9 500 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 CYHR1Q6ZMK1 362 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 S100A7AQ86SG5 101 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 KLHDC8AQ8IYD2 350 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 FAM160A2Q8N612 972 aaPredicted RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 LMNTD1Q8N9Z9 388 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 OR10A7Q8NGE5 316 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 NDUFAF3Q9BU61 184 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 ISYNA1Q9NPH2 558 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 TM7SF3Q9NS93 570 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 RPL36Q9Y3U8 105 aaKnown RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 TRIOBPQ9H2D6 2365 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 SC5DO75845 299 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 CAV3P56539 151 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 NRG3P56975 720 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ZNF616Q08AN1 781 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 AIMP2Q13155 320 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 HMGN3Q15651 99 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 WDR88Q6ZMY6 472 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 MAML2Q8IZL2 1156 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 C20orf85Q9H1P6 137 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 MYNNQ9NPC7 610 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 TBC1D29Q9UFV1 150 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 MOKQ9UQ07 419 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 CLIC1O00299 241 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 DFFBO76075 338 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 CYB5R3P00387 301 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 MRPL19P49406 292 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 LUMP51884 338 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 SPIBQ01892 262 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 FZD2Q14332 565 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 SLC10A1Q14973 349 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 C1orf189Q5VU69 101 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 C18orf63Q68DL7 685 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 OR8J3Q8NGG0 315 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 SMAD5Q99717 465 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 SEC11CQ9BY50 192 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 HIPK2Q9H2X6 1198 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ADAM18Q9Y3Q7 739 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 UPK1AO00322 258 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 F12P00748 615 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 ABOP16442 354 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 RAB5AP20339 215 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 SLC2A5P22732 501 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 AHCYP23526 432 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 CDX1P47902 265 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 METAP1P53582 386 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 TRA2AQ13595 282 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-205ENST00000424265 LARP4Q71RC2 724 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-205ENST00000424265 FAM181AQ8N9Y4 354 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ZNF671Q8TAW3 534 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 DAZLQ92904 295 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 PRO3102Q9H379 93 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 B3GAT2Q9NPZ5 323 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ASIC5Q9NY37 505 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 KCMF1Q9P0J7 381 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 NLRC5Q86WI3 1866 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 FAM220BPB1ANY3 271 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 NPIPA2E9PIF3 369 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 H3BN98 237 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ARPC1BO15143 372 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 SUV39H1O43463 412 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 UQCRC2P22695 453 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 CRISP3P54108 245 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 DLX5P56178 289 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 LPAL2Q16609 132 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 PMS2CLQ68D20 193 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 C8orf82Q6P1X6 216 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 MMABQ96EY8 250 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 BMFQ96LC9 184 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 TMEM208Q9BTX3 173 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 ACKR4Q9NPB9 350 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 DKKL1Q9UK85 242 aa9.01□□□□□ -0.97
USP54-205ENST00000424265 NXT1Q9UKK6 140 aaKnown RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 TMEM184BQ9Y519 407 aaPredicted RBP9.01□□□□□ -0.97
USP54-205ENST00000424265 hCG_1809904A0A1W2PP81 198 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms