RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 Q6ZT83 130 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 CLDN22Q8N7P3 220 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 ATG16L2Q8NAA4 619 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 ICA1LQ8NDH6 482 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 POLDIP3Q9BY77 421 aaKnown RBP25.93■■□□□ 1.74
USP42-202ENST00000404008 ZNF556Q9HAH1 456 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 SLC7A10Q9NS82 523 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 GALNT8Q9NY28 637 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 IL20Q9NYY1 176 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 MALT1Q9UDY8 824 aa25.93■■□□□ 1.74
USP42-202ENST00000404008 OR6C65A6NJZ3 312 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 ZNF726A6NNF4 738 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 SLC43A1O75387 559 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 CAMK2DQ13557 499 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 RPL13AP3Q6NVV1 102 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 DPY19L2P2Q6ZN68 376 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 GABRG1Q8N1C3 465 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 UBE2J2Q8N2K1 259 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 POMGNT2Q8NAT1 580 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 SAMD8Q96LT4 415 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 TSPAN32Q96QS1 320 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 NRIP3Q9NQ35 241 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 KIF17Q9P2E2 1029 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 ZNF346Q9UL40 294 aaKnown RBP25.92■■□□□ 1.74
USP42-202ENST00000404008 ADAM18Q9Y3Q7 739 aa25.92■■□□□ 1.74
USP42-202ENST00000404008 SAC3D1A6NKF1 404 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 TP53P04637 393 aaPredicted RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 SLC6A6P31641 620 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 DAPP51397 102 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 RPL27P61353 136 aaKnown RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 ERVK-25P63136 954 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 LGALS3BPQ08380 585 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 TOP3AQ13472 1001 aaPredicted RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 FAM122BQ7Z309 247 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 RNASE6Q93091 150 aaKnown RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 SLC25A44Q96H78 314 aaPredicted RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 LINC00470Q9BZP3 86 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 ELOVL5Q9NYP7 299 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 REV1Q9UBZ9 1251 aa25.91■■□□□ 1.74
USP42-202ENST00000404008 KLF2Q9Y5W3 355 aaPredicted RBP25.91■■□□□ 1.74
USP42-202ENST00000404008 BAG2O95816 211 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 RCN1Q15293 331 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 CARD17Q5XLA6 110 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 HDDC2Q7Z4H3 204 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 ZNF519Q8TB69 540 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 DNAJC9Q8WXX5 260 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 LRRC46Q96FV0 321 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 LRR1Q96L50 414 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 PLA2G12AQ9BZM1 189 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 UPB1Q9UBR1 384 aa25.9■■□□□ 1.74
USP42-202ENST00000404008 FOXD3Q9UJU5 478 aaPredicted RBP25.9■■□□□ 1.74
USP42-202ENST00000404008 UPK3AO75631 287 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 SOX14O95416 240 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 CLDN1O95832 211 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 IGFBP1P08833 259 aaPredicted RBP25.89■■□□□ 1.74
USP42-202ENST00000404008 RUNX1T1Q06455 604 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 FAPQ12884 760 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 C20orf196Q8IYI0 205 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 OR8D4Q8NGM9 314 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 ZNF566Q969W8 418 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 NPDC1Q9NQX5 325 aaPredicted RBP25.89■■□□□ 1.74
USP42-202ENST00000404008 ASB6Q9NWX5 421 aa25.89■■□□□ 1.74
USP42-202ENST00000404008 STX18Q9P2W9 335 aaKnown RBP25.89■■□□□ 1.74
USP42-202ENST00000404008 ALPK2Q86TB3 2170 aa25.89■■□□□ 1.73
USP42-202ENST00000404008 PGA4P0DJD7 388 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 PGA3P0DJD8 388 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 ACADSP16219 412 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 GRNP28799 593 aaKnown RBP25.88■■□□□ 1.73
USP42-202ENST00000404008 CD79BP40259 229 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 PCYT1AP49585 367 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 FAM205BPQ63HN1 556 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 ARIH2OSQ8N7S6 290 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 OR52L1Q8NGH7 329 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 Q96M85 177 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 ALKBH3Q96Q83 286 aaPredicted RBP25.88■■□□□ 1.73
USP42-202ENST00000404008 IFT27Q9BW83 186 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 MRPL13Q9BYD1 178 aaKnown RBP25.88■■□□□ 1.73
USP42-202ENST00000404008 SMURF2Q9HAU4 748 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 PAPOLBQ9NRJ5 636 aaKnown RBP25.88■■□□□ 1.73
USP42-202ENST00000404008 GRHPRQ9UBQ7 328 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 POFUT2Q9Y2G5 429 aa25.88■■□□□ 1.73
USP42-202ENST00000404008 USP9YO00507 2555 aaPredicted RBP25.88■■□□□ 1.73
USP42-202ENST00000404008 PDLIM1O00151 329 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 PPP1R3DO95685 299 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 IGHG1P01857 330 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 APEHP13798 732 aaKnown RBP25.87■■□□□ 1.73
USP42-202ENST00000404008 ANPEPP15144 967 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 SDHAP31040 664 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 ACVR1BP36896 505 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 FAM27E3Q08E93 113 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 P2RY6Q15077 328 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 CLEC12AQ5QGZ9 265 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 PHYHD1Q5SRE7 291 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 KDM4DQ6B0I6 523 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 GPR139Q6DWJ6 353 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 LINGO2Q7L985 606 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 GPR137CQ8N3F9 429 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 TMEM54Q969K7 222 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 ZNF570Q96NI8 536 aa25.87■■□□□ 1.73
USP42-202ENST00000404008 CIB1Q99828 191 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms