RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRAMEF20Q5VT98 475 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 TIMD4Q96H15 378 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 ZBED3Q96IU2 234 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF582Q96NG8 517 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 CEPT1Q9Y6K0 416 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KCPQ6ZWJ8 1503 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SNCGO76070 127 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SCG5P05408 212 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KCNJ8Q15842 424 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 NXNL2Q5VZ03 156 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MRPL43Q8N983 215 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KIRREL1Q96J84 757 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MED20Q9H944 212 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 LOC100289279A0A1B0GTE1 492 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 EDDM3BP56851 147 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 CISD2Q8N5K1 135 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 EMG1Q92979 244 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 INSM2Q96T92 566 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 A4GALTQ9NPC4 353 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 MUTYHQ9UIF7 546 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SIT1Q9Y3P8 196 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SEC14L6B5MCN3 397 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 PMP2P02689 132 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 CSN1S1P47710 185 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC6A11P48066 632 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 FLI1Q01543 452 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC5A12Q1EHB4 618 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 LGALS14Q8TCE9 139 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 LRFN5Q96NI6 719 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 DNMT3BQ9UBC3 853 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ADAM10O14672 748 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 DEGS1O15121 323 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 GABRA4P48169 554 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF91Q05481 1191 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC35D3Q5M8T2 416 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC35D2Q76EJ3 337 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 KANSL1Q7Z3B3 1105 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ERVMER34-1Q9H9K5 563 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 LHX3Q9UBR4 397 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 CORINQ9Y5Q5 1042 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 DFFBO76075 338 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ADRA1AP35348 466 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF93P35789 620 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 GDNFP39905 211 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ADGRE4PQ86SQ3 457 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 NAXDQ8IW45 347 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 TXLNGYQ9BZA5 131 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 PIGLQ9Y2B2 252 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 BMP1P13497 986 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 TCN2P20062 427 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 PAX6P26367 422 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 HTR1FP30939 366 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 ALKBH1Q13686 389 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 PAPD4Q6PIY7 484 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 OR51A2Q8NGJ7 313 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 KCNJ15Q99712 375 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 OSGIN1Q9UJX0 560 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 H0YIV9 168 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 BCL7AQ4VC05 210 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 OR13C9Q8NGT0 318 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC46A2Q9BY10 475 aa11.84□□□□□ -0.51
CCDC88C-204ENST00000389857 SNRPBP14678 240 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SELPLGQ14242 412 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM31Q5JXX7 168 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 CLEC14AQ86T13 490 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 PLEKHF2Q9H8W4 249 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 HEYLQ9NQ87 328 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 MTCH1Q9NZJ7 389 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 OR52A1Q9UKL2 312 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 NDUFA6P56556 154 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 REEP5Q00765 189 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SFXN4Q6P4A7 337 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 ADAMTSL4Q6UY14 1074 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SYT9Q86SS6 491 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 PXT1Q8NFP0 134 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 OR10J5Q8NHC4 309 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC35A4Q96G79 324 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 HDAC8Q9BY41 377 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 A0A0U1RQS6 177 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 ACOD1A6NK06 481 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 GPR171O14626 319 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 HCRTR1O43613 425 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 PSMB1P20618 241 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 FKBP2P26885 142 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 IL10RAQ13651 578 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 C18orf63Q68DL7 685 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 OR10K2Q6IF99 312 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM122CQ6P4D5 195 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 H2BFWTQ7Z2G1 175 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 ABHD4Q8TB40 342 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 RANGRFQ9HD47 186 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 POM121CA8CG34 1229 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 EDN1P05305 212 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 IVDP26440 423 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC1A3P43003 542 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 MED25Q71SY5 747 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 GJC3Q8NFK1 279 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 DCLRE1CQ96SD1 692 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 KIAA1456Q9P272 454 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms