RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RPS25P62851 125 aaKnown RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 ZNF45Q02386 682 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TLE1Q04724 770 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 OXA1LQ15070 435 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TRIM16LQ309B1 348 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ARMC4Q5T2S8 1044 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 OR51G2Q8NGK0 314 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 OR52N1Q8NH53 320 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 NEIL3Q8TAT5 605 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 DNAJA4Q8WW22 397 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 TMEM234Q8WY98 164 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TMEM203Q969S6 136 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SARAFQ96BY9 339 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TNFRSF13CQ96RJ3 184 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PIGQQ9BRB3 760 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ZNF649Q9BS31 505 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 MED20Q9H944 212 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 MCCC2Q9HCC0 563 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 CRNNQ9UBG3 495 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 ICAM5Q9UMF0 924 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TNRC6AQ8NDV7 1962 aaKnown RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 TRGV5A0A0B4J1U4 118 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PNMA8CA0A1B0GUJ8 204 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SLC22A31A6NKX4 558 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PRR23D1E9PI22 279 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 NPIPA5E9PKD4 350 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 GNB5O14775 395 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 AKAP8O43823 692 aaKnown RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 PPP1R3DO95685 299 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 RFPL3SP0C7P2 107 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PRR23D2P0DMB1 279 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 ZNF3P17036 446 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PGCP20142 388 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 DPP4P27487 766 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SLC6A6P31641 620 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 GABRA5P31644 462 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ETV6P41212 452 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 RORCP51449 518 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PSMD7P51665 324 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ZNF41P51814 821 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 PMP22Q01453 160 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ACSM1Q08AH1 577 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SKP2Q13309 424 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 FHL1Q13642 323 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 BCL2A1Q16548 175 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TRILQ7L0X0 811 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 PARP16Q8N5Y8 322 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 MINDY2Q8NBR6 621 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SLC37A3Q8NCC5 494 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ST8SIA1Q92185 356 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 KISS1RQ969F8 398 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 PPP1R14BQ96C90 147 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 KCNS3Q9BQ31 491 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 HCAR1Q9BXC0 346 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 BARHL1Q9BZE3 327 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 LDAHQ9H6V9 325 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SNTG1Q9NSN8 517 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 RHBDL2Q9NX52 303 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 TAS2R10Q9NYW0 307 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 DKKL1Q9UK85 242 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 NPIPA1Q9UND3 350 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 SF3B6Q9Y3B4 125 aaKnown RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 COL6A6A6NMZ7 2263 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZFYVE26Q68DK2 2539 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 A0A087WUJ7 227 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZC3H12DA2A288 527 aaKnown RBP9.16□□□□□ -0.94
VPS53-202ENST00000389040 HAX1O00165 279 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZIC3O60481 467 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 UPK1BO75841 260 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 TRAPPC6AO75865 159 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 CDRT1O95170 752 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 LALBAP00709 142 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 IL1AP01583 271 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 PRB1P04280 392 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 PEPDP12955 493 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 HK1P19367 917 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 MST1P26927 711 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 NOS3P29474 1203 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 PTGER4P35408 488 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 HTR3AP46098 478 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZNF117Q03924 483 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 CD226Q15762 336 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZNF181Q2M3W8 571 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 KLHL12Q53G59 568 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 SLC25A53Q5H9E4 307 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 SPANXN2Q5MJ10 180 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 C22orf42Q6IC83 251 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ZNF322Q6U7Q0 402 aaPredicted RBP9.16□□□□□ -0.94
VPS53-202ENST00000389040 B3GLCTQ6Y288 498 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 PM20D2Q8IYS1 436 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 ACBD7Q8N6N7 88 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 FAM83FQ8NEG4 500 aaPredicted RBP9.16□□□□□ -0.94
VPS53-202ENST00000389040 SPRYD4Q8WW59 207 aaPredicted RBP9.16□□□□□ -0.94
VPS53-202ENST00000389040 PTP4A1Q93096 173 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 SLC25A46Q96AG3 418 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 C3orf49Q96BT1 292 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 SGTBQ96EQ0 304 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 MRGPRX4Q96LA9 322 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 KCTD7Q96MP8 289 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 TM9SF2Q99805 663 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms