RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 PDX1P52945 283 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 SHHQ15465 462 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 EIF5A2Q9GZV4 153 aaKnown RBP4.55□□□□□ -1.68
PCDH9-201ENST00000377861 FXYD6-FXYD2A0A087WZ82 144 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 TNFRSF17Q02223 184 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 RAB24Q969Q5 203 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 FXYD6Q9H0Q3 95 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 TMEM185BQ9H7F4 350 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 Q6ZVU0 165 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 OR8S1Q8NH09 359 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 LPPQ93052 612 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 EGLN3Q9H6Z9 239 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF629Q9UEG4 869 aaPredicted RBP4.55□□□□□ -1.68
PCDH9-201ENST00000377861 GABRB1P18505 474 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 KITLGP21583 273 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 LCORQ96JN0 433 aaPredicted RBP4.55□□□□□ -1.68
PCDH9-201ENST00000377861 OR7D2Q96RA2 312 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 SOHLH2Q9NX45 425 aa4.55□□□□□ -1.68
PCDH9-201ENST00000377861 FBXO48Q5FWF7 155 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 OR5H6Q8NGV6 325 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CXXC1Q9P0U4 656 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 TMEM269A0A1B0GVZ9 245 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 NKX2-2O95096 273 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF14P17017 642 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CCKARP32238 428 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 NFATC4Q14934 902 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ACSF3Q4G176 576 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 C14orf119Q9NWQ9 140 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ELF5Q9UKW6 265 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SOX1O00570 391 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ATP1B3P54709 279 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CSNK1G2P78368 415 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SGCBQ16585 318 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 TMEM150AQ86TG1 271 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 METTL17Q9H7H0 456 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 NGBQ9NPG2 151 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 C17orf112F2Z3M2 114 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CTSVO60911 334 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 COMMD2Q86X83 199 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ARMC10Q8N2F6 343 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CHODLQ9H9P2 273 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 LINC00854A0A1B0GVQ3 168 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 TAF9Q16594 264 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 MRPL24Q96A35 216 aaKnown RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 FKBP11Q9NYL4 201 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SIGLEC11Q96RL6 698 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 RTP3Q9BQQ7 232 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 NSA2O95478 260 aaKnown RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 RPL27P61353 136 aaKnown RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF85Q03923 595 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 C11orf96Q7Z7L8 435 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 TCEAL2Q9H3H9 227 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ERVMER34-1Q9H9K5 563 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 GFOD1Q9NXC2 390 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 NRXN3Q9Y4C0 1643 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 C5orf67F2Z3F1 127 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 MSTNO14793 375 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CAMK2BQ13554 666 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 UNQ9370/PRO34162Q6UXP9 181 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 PMS2P1A4D2B8 440 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 EIF4E1BA6NMX2 242 aaKnown RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 KLHDC1Q8N7A1 406 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 UCN3Q969E3 161 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SPHK1Q9NYA1 384 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 KCTD3Q9Y597 815 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 AHDC1Q5TGY3 1603 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ERGP11308 486 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 GCSHP23434 173 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 RACK1P63244 317 aaKnown RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 FOXB2Q5VYV0 432 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SULT4A1Q9BR01 284 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 DNAJC27Q9NZQ0 273 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF593O00488 134 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ITGA5P08648 1049 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF443Q9Y2A4 671 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 LOC390937A0A1W2PQ73 354 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 HEXBP07686 556 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CDK3Q00526 305 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 OR4F15Q8NGB8 312 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 OR52E2Q8NGJ4 325 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SAMD8Q96LT4 415 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF75AQ96N20 296 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 HCAR1Q9BXC0 346 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF529Q6P280 563 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF280BQ86YH2 543 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SCAMP4Q969E2 229 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 MS4A6EQ96DS6 147 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 METTL9Q9H1A3 318 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 F8W036 122 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SSX7Q7RTT5 188 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 TMEM25Q86YD3 366 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 MCEMP1Q8IX19 187 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 BARHL1Q9BZE3 327 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ELOVL3Q9HB03 270 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 GRXCR1A8MXD5 290 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SH3BGRLO75368 114 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 CD8BP10966 210 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 ZNF155Q12901 538 aaPredicted RBP4.54□□□□□ -1.68
PCDH9-201ENST00000377861 SLC39A5Q6ZMH5 540 aa4.54□□□□□ -1.68
PCDH9-201ENST00000377861 OR2I1PQ8NGU4 316 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms