RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ZNF583Q96ND8 569 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 PRSS27Q9BQR3 290 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 CCDC134Q9H6E4 229 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 NANSQ9NR45 359 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 TAS2R5Q9NYW4 299 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 ABCA1O95477 2261 aa18.83■□□□□ 0.61
CCDC28B-201ENST00000373602 LOC100653049A0A140TA62 436 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 B9A039 149 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 CD5LO43866 347 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 KRT34O76011 436 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 F12P00748 615 aaPredicted RBP18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 TP53P04637 393 aaPredicted RBP18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 IFNGR1P15260 489 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 CAPZA2P47755 286 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 SNRPD2P62316 118 aaKnown RBP18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 GUCY1A3Q02108 690 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 HGFACQ04756 655 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 EFNB3Q15768 340 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 ADIPOQQ15848 244 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 CARM1Q86X55 608 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 PCYOX1LQ8NBM8 494 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 ULBP2Q9BZM5 246 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 GID8Q9NWU2 228 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 B3GNT2Q9NY97 397 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF229Q9UJW7 825 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 BAG5Q9UL15 447 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 POFUT2Q9Y2G5 429 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 SH3GLB1Q9Y371 365 aa18.83■□□□□ 0.6
CCDC28B-201ENST00000373602 IGHV2OR16-5A0A0B4J2B6 119 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 KPNA4O00629 521 aaPredicted RBP18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 CSF3P09919 207 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 OR4A8P0C604 315 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 ASAH2BP0C7U1 165 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 SLC25A16P16260 332 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 CSNK1A1P48729 337 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 BIDP55957 195 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 NPRL3Q12980 569 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF813Q6ZN06 617 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 SLC35D2Q76EJ3 337 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 PRIMA1Q86XR5 153 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 LRRC17Q8N6Y2 441 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 IL17RDQ8NFM7 739 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 OR6X1Q8NH79 312 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 C10orf105Q8TEF2 133 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 C10orf82Q8WW14 230 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 FAM168AQ92567 244 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF442Q9H7R0 627 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 CAPN7Q9Y6W3 813 aa18.82■□□□□ 0.6
CCDC28B-201ENST00000373602 TLX2O43763 284 aaPredicted RBP18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 IFNA14P01570 189 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 HLA-HP01893 362 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 LOXL1Q08397 574 aaPredicted RBP18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 VHLLQ6RSH7 139 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 TMEM54Q969K7 222 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 SORCS2Q96PQ0 1159 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 FOXB1Q99853 325 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 POLR2J2Q9GZM3 115 aaKnown RBP18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 POLR2J3Q9H1A7 115 aaKnown RBP18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 PLK3Q9H4B4 646 aa18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 MEPEQ9NQ76 525 aaPredicted RBP18.81■□□□□ 0.6
CCDC28B-201ENST00000373602 FAM220BPB1ANY3 271 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 SLC22A2O15244 555 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 RNF13O43567 381 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 GPRIN2O60269 458 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 CRLF1O75462 422 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 LY6HO94772 140 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 OR5F1O95221 314 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 HIST1H2ABP04908 130 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 TNFRSF1BP20333 461 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 HIST3H2AQ7L7L0 130 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 SLC46A3Q7Z3Q1 461 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 NANOS1Q8WY41 292 aaKnown RBP18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 HIST1H2ACQ93077 130 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF75AQ96N20 296 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 TNFRSF13CQ96RJ3 184 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 NOX3Q9HBY0 568 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 FKBP7Q9Y680 259 aa18.8■□□□□ 0.6
CCDC28B-201ENST00000373602 MT-ND1P03886 318 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 UMPSP11172 480 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 B4GALT1P15291 398 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 THBS4P35443 961 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 RBM34P42696 430 aaKnown RBP18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 TAS2R41P59536 307 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 GSG1Q2KHT4 349 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 HSP90B2PQ58FF3 399 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 DEF8Q6ZN54 512 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 NKAIN4Q8IVV8 208 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 GLTPQ9NZD2 209 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF224Q9NZL3 707 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 ARMCX1Q9P291 453 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 RIMS3Q9UJD0 308 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 FBXO9Q9UK97 447 aaPredicted RBP18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 JMJD1CQ15652 2540 aa18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 ANK3Q12955 4377 aaKnown RBP18.79■□□□□ 0.6
CCDC28B-201ENST00000373602 VSTM5A8MXK1 200 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 SHOX2O60902 331 aaPredicted RBP18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 IGF2P01344 180 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 CD79AP11912 226 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 NPR2P20594 1047 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 KDELR2P33947 212 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms