RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PIGXQ8TBF5 258 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 EME1Q96AY2 570 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 NMNAT3Q96T66 252 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 KLHL4Q9C0H6 718 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 OPN3Q9H1Y3 402 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 TOR3AQ9H497 397 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ZNF229Q9UJW7 825 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RNF6Q9Y252 685 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ORC6Q9Y5N6 252 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GJE1A6NN92 205 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TPD52L2O43399 206 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 OR2T1O43869 369 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SEC14L2O76054 403 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ADRA2AP08913 450 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 BMP5P22003 454 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 AGTR1P30556 359 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RPL4P36578 427 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 CENPAP49450 140 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CLK1P49759 484 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 MAP2K6P52564 334 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CLDN17P56750 224 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CTXN1P60606 82 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SLC35A1P78382 337 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CDK5Q00535 292 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TOP3AQ13472 1001 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 C1DQ13901 141 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 DAG1Q14118 895 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ALG10Q5BKT4 473 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 EEF1A1P5Q5VTE0 462 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CD300LDQ6UXZ3 194 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ZNF610Q8N9Z0 462 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RELL2Q8NC24 303 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 OR4K13Q8NH42 304 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 HDAC2Q92769 488 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 CPNE4Q96A23 557 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 NRBF2Q96F24 287 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RHNO1Q9BSD3 238 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MRPL13Q9BYD1 178 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 GRIP2Q9C0E4 1043 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RERGLQ9H628 205 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 FANCFQ9NPI8 374 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SLC7A10Q9NS82 523 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 B3GALT5Q9Y2C3 310 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 PLCE1Q9P212 2302 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 IGKV3D-15A0A087WSY6 115 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TEX13CA0A0J9YWL9 993 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 A0A1W2PNV4 684 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 NKX2-6A6NCS4 301 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CD8B2A6NJW9 211 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 LINC01387J3KSC0 135 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 BCKDKO14874 412 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RCBTB2O95199 551 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ANOS1P23352 680 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RPS27P42677 84 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 ALDH3A2P51648 485 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 BIDP55957 195 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SMIM11AP58511 58 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 NPRL3Q12980 569 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GINS1Q14691 196 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SF3B4Q15427 424 aaKnown RBP eCLIP3.56□□□□□ -1.84
LIG4-201ENST00000356922 C6orf52Q5T4I8 152 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 C1orf185Q5T7R7 199 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RASSF6Q6ZTQ3 369 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 SLC35D2Q76EJ3 337 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MAMDC2Q7Z304 686 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 PXKQ7Z7A4 578 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 LUZP2Q86TE4 346 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 HIPK1Q86Z02 1210 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TMEM123Q8N131 208 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CNEP1R1Q8N9A8 125 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 NPEPL1Q8NDH3 523 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 FGFBP3Q8TAT2 258 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GNPDA2Q8TDQ7 276 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 NMD3Q96D46 503 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 OR2M2Q96R28 347 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TSSK6Q9BXA6 273 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GABARAPL1Q9H0R8 117 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 EVA1AQ9H8M9 152 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 BCO1Q9HAY6 547 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 A0A1W2PR80 420 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 FIGNL2A6NMB9 653 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 H3BN98 237 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 C19orf84I3L1E1 186 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PRKYO43930 277 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ADAP00813 363 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 MT-ATP6P00846 226 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 IGF2P01344 180 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 YES1P07947 543 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PATE4P0C8F1 98 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OSMP13725 252 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PLA2G2AP14555 144 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 IGFBP5P24593 272 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CDAP32320 146 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 IFNGR2P38484 337 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 GUCA1AP43080 201 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 SLC16A1P53985 500 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CRISP1P54107 249 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CSNK2A1P68400 391 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 FAM27E3Q08E93 113 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZP4Q12836 540 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms