RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OR2B6P58173 313 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 GPR85P60893 370 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 FABP5Q01469 135 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TOMM20Q15388 145 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TMEM176BQ3YBM2 270 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF404Q494X3 552 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ABHD17BQ5VST6 288 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 EEF1A1P5Q5VTE0 462 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 VASNQ6EMK4 673 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 VASH1Q7L8A9 365 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF227Q86WZ6 799 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 SNX33Q8WV41 574 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 KIAA1143Q96AT1 154 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 IP6K3Q96PC2 410 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 NPIPA1Q9UND3 350 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 B3GALT5Q9Y2C3 310 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 SIRT4Q9Y6E7 314 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TVP23AA6NH52 213 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 METTL15A6NJ78 407 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 E9PI62 339 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 CBR3O75828 277 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 INHBBP09529 407 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 IFNGR1P15260 489 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 DAP3P51398 398 aaKnown RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 BMXP51813 675 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 DCTN2Q13561 401 aaKnown RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 THAP4Q8WY91 577 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 IRF2BPLQ9H1B7 796 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 NCKAP5O14513 1909 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 GPANK1O95872 356 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 CSRP1P21291 193 aaKnown RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 SOX6P35712 828 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 TAS2R43P59537 309 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 HSF1Q00613 529 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 RUNX1T1Q06455 604 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 AIMP2Q13155 320 aaKnown RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 CDONQ4KMG0 1287 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 ARL9Q6T311 187 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 RPTNQ6XPR3 784 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 SLC16A9Q7RTY1 509 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 DTX1Q86Y01 620 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 CLEC1AQ8NC01 280 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 ASB10Q8WXI3 467 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 SNX18Q96RF0 628 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 HDHD5Q9BXW7 423 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 MED29Q9NX70 200 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 VSX1Q9NZR4 365 aaPredicted RBP12.02□□□□□ -0.49
HMGB1-202ENST00000339872 LRFN1Q9P244 771 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 GNG8Q9UK08 70 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 HDGFL3Q9Y3E1 203 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 GRIP1Q9Y3R0 1128 aa12.02□□□□□ -0.49
HMGB1-202ENST00000339872 MED12Q93074 2177 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 A0A1W2PNV4 684 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 SLC22A23A1A5C7 686 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 OR2M5A3KFT3 312 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 ZIC3O60481 467 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 SLC16A7O60669 478 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 FKBP2P26885 142 aaKnown RBP12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CASRP41180 1078 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CAPZA2P47755 286 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CENPAP49450 140 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 ATP1A1-AS1Q5TC04 95 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CD200R1LQ6Q8B3 271 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 SLC35D2Q76EJ3 337 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 TIGD4Q8IY51 512 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 SYS1Q8N2H4 156 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 OR6N2Q8NGY6 317 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 MRPL48Q96GC5 212 aaKnown RBP12.01□□□□□ -0.49
HMGB1-202ENST00000339872 FER1L6-AS2Q96M78 137 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 FOXN4Q96NZ1 517 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 DCLRE1CQ96SD1 692 aaKnown RBP12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CDADC1Q9BWV3 514 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 C6orf62Q9GZU0 229 aaPredicted RBP12.01□□□□□ -0.49
HMGB1-202ENST00000339872 CCDC86Q9H6F5 360 aaKnown RBP12.01□□□□□ -0.49
HMGB1-202ENST00000339872 DEPPQ9NTK1 212 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 ABI3Q9P2A4 366 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 B9D1Q9UPM9 204 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 FKBP7Q9Y680 259 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 FREM3P0C091 2139 aa12.01□□□□□ -0.49
HMGB1-202ENST00000339872 TRDV1A0A1B0GX56 115 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 A6NIZ1 184 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 CD8B2A6NJW9 211 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 SULT2B1O00204 365 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 GABRPO00591 440 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 FZD7O75084 574 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 HLA-DQA2P01906 255 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 HLA-DPB1P04440 258 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 CD8BP10966 210 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 RPS19P39019 145 aaKnown RBP12□□□□□ -0.49
HMGB1-202ENST00000339872 NOVA1P51513 510 aaKnown RBP12□□□□□ -0.49
HMGB1-202ENST00000339872 RAP1BP61224 184 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 RAP1AP62834 184 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 HSF2Q03933 536 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 MXD1Q05195 221 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 GPR50Q13585 617 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 INSL4Q14641 139 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 TBC1D25Q3MII6 688 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 SPINK14Q6IE38 97 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 PXKQ7Z7A4 578 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms