RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 DENRO43583 198 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 SDHAP31040 664 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 MRPL19P49406 292 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 ART1P52961 327 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 VAMP2P63027 116 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 TMEM69Q5SWH9 247 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 B3GNTL1Q67FW5 361 aaPredicted RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 PYHIN1Q6K0P9 492 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 XKRXQ6PP77 449 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 GPR155Q7Z3F1 870 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 SNX29P2Q8IUI4 249 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 FBXL14Q8N1E6 418 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 MARVELD2Q8N4S9 558 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 OR11A1Q9GZK7 315 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 KCNJ16Q9NPI9 418 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 EXOSC3Q9NQT5 275 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 TMEM212A6NML5 194 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ZNF850A8MQ14 1090 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ALG1L2C9J202 215 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 FCMRO60667 390 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 RLN2P04090 185 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ZNF117Q03924 483 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 RPL22L1Q6P5R6 122 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 WDR88Q6ZMY6 472 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 BEND4Q6ZU67 534 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ASB5Q8WWX0 329 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 RASD2Q96D21 266 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 LMF1Q96S06 567 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 TNFRSF12AQ9NP84 129 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 HRH3Q9Y5N1 445 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PQD3 144 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 HSPB2A8KAH6 182 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 AZGP1P25311 298 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 INSM1Q01101 510 aaPredicted RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 CDK5R2Q13319 367 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 HSPB2Q16082 182 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 STEAP2Q8NFT2 490 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 OR4N2Q8NGD1 307 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 SLC35B4Q969S0 331 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 RASL10BQ96S79 203 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 METTL9Q9H1A3 318 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 SYT4Q9H2B2 425 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 MYO7AQ13402 2215 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 PDE4DIPQ5VU43 2346 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 TEX13DA0A0J9YY54 714 aaPredicted RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 UBCP0CG48 685 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 ERGP11308 486 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 CSF2RBP32927 897 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 GPR50Q13585 617 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 EBPQ15125 230 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 KCNJ8Q15842 424 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 KRTCAP3Q53RY4 240 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ZNF691Q5VV52 312 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 PGBD2Q6P3X8 592 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 CISD2Q8N5K1 135 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 AMER3Q8N944 861 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 POTEKPQ9BYX7 375 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 ESRP2Q9H6T0 727 aaKnown RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 PDCD11Q14690 1871 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 TMEM72A0PK05 275 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PRAMEF4O60810 478 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PSMB10P40306 273 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 TIAL1Q01085 375 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP54-201ENST00000339859 MADCAM1Q13477 382 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PRAMEF9Q5VWM5 478 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 C22orf42Q6IC83 251 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 SLC16A9Q7RTY1 509 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 COA3Q9Y2R0 106 aaPredicted RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 CLDN6P56747 220 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 NKAIN4Q8IVV8 208 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 SORCS2Q96PQ0 1159 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 ARHGDIGQ99819 225 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 RTL8AQ9BWD3 113 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 TGIF2Q9GZN2 237 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 CD300AQ9UGN4 299 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 FAM183AA6NL82 134 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 SP1P08047 785 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 MRM1Q6IN84 353 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 B3GNT8Q7Z7M8 397 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 ZFP41Q8N8Y5 198 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 TXNIPQ9H3M7 391 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 SLC25A37Q9NYZ2 338 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 ZNF346Q9UL40 294 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PQM1 296 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 CLDN25C9JDP6 229 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 HOXD4P09016 255 aaPredicted RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 C21orf58P58505 322 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 RAC1P63000 192 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 RIPPLY1Q0D2K3 151 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 TIGD3Q6B0B8 471 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PGAP1Q75T13 922 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PIWIL3Q7Z3Z3 882 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 ZNF610Q8N9Z0 462 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 ZNF582Q96NG8 517 aaPredicted RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 PVALBP20472 110 aaPredicted RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 HTR1FP30939 366 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 DUSP7Q16829 419 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 MRPL41Q8IXM3 137 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 SAMD12Q8N8I0 201 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 SLC37A3Q8NCC5 494 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms