RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PAQR5Q9NXK6 330 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 EXOSC1Q9Y3B2 195 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 FKBP7Q9Y680 259 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ZFHX4Q86UP3 3567 aa13.33□□□□□ -0.27
CCDC88C-202ENST00000334448 ANKRD11Q6UB99 2663 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 TMEM129A0AVI4 362 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 NPIPA5E9PKD4 350 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 SMAD9O15198 467 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 GLCEO94923 617 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 BCL10O95999 233 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 RENP00797 406 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ITGB2P05107 769 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 HLA-DOBP13765 273 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 GSTT1P30711 240 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ACVR1BP36896 505 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 RFC3P40938 356 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 BLVRAP53004 296 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC16A1P53985 500 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 POU3F1Q03052 451 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 HBMQ6B0K9 141 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 VASNQ6EMK4 673 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 LRRC69Q6ZNQ3 347 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF367Q7RTV3 350 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 UEVLDQ8IX04 471 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 PROKR2Q8NFJ6 384 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 OR6X1Q8NH79 312 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 CPNE4Q96A23 557 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 NMD3Q96D46 503 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 DNAJA3Q96EY1 480 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ADAD1Q96M93 576 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 KCNK17Q96T54 332 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF649Q9BS31 505 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 MRPL13Q9BYD1 178 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 SRXN1Q9BYN0 137 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 CCDC90BQ9GZT6 254 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 RBM38Q9H0Z9 239 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC6A15Q9H2J7 730 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 MARCH7Q9H992 704 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 ADGRL4Q9HBW9 690 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 TIGARQ9NQ88 270 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 NPIPA1Q9UND3 350 aa13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 LSM2Q9Y333 95 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-202ENST00000334448 NCOR2Q9Y618 2525 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 A0A1B0GVC2 190 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC22A23A1A5C7 686 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF99A8MXY4 864 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 EIF1AYO14602 144 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 TNFSF11O14788 317 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 PLGP00747 810 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 OPN1LWP04000 364 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SBK2P0C263 348 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 CLUP10909 449 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 CPN1P15169 458 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 IFNGR1P15260 489 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF24P17028 368 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SUCLG1P53597 346 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 CARD18P57730 90 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 ACTC1P68032 377 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 ACTA1P68133 377 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC17A1Q14916 467 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 RAB39AQ14964 217 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 PON3Q15166 354 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 NEDD8Q15843 81 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 TBR1Q16650 682 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SATL1Q86VE3 508 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SIAH3Q8IW03 269 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 MEIOBQ8N635 442 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 OR9Q1Q8NGQ5 310 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 OR10D3Q8NH80 312 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 FNDC8Q8TC99 324 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 SMPDL3BQ92485 455 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 RORBQ92753 470 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 OR51V1Q9H2C8 321 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 PLSCR2Q9NRY7 297 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 ASB6Q9NWX5 421 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 TNFRSF10DQ9UBN6 386 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 COMMD3-BMI1R4GMX3 469 aa13.32□□□□□ -0.28
CCDC88C-202ENST00000334448 CELSR3Q9NYQ7 3312 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 IGLV1-36A0A0B4J1U3 117 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 TRGV5A0A0B4J1U4 118 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ARHGEF9O43307 516 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 RAMP1O60894 148 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 PTHP01270 115 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 PDGFAP04085 211 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 LIMS3P0CW19 117 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 LIMS4P0CW20 117 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF43P17038 809 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 MYL12AP19105 171 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ENPP1P22413 925 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 MAP2K4P45985 399 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 GP2P55259 537 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 RUNX1T1Q06455 604 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 HIST3H3Q16695 136 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 KLHL12Q53G59 568 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 TMEM225Q6GV28 225 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 GPR141Q7Z602 305 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 EGFL6Q8IUX8 553 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 KDM8Q8N371 416 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 NANOGP1Q8N7R0 232 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF485Q8NCK3 441 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms