RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FAM166BA8MTA8 275 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 LILRB3O75022 631 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 SDC1P18827 310 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 PMPCAQ10713 525 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ACVR1CQ8NER5 493 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM38AQ9H6F2 299 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 UBQLN4Q9NRR5 601 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CHEK1O14757 476 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ST8SIA3O43173 380 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CDH26Q8IXH8 852 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 DMBX1Q8NFW5 382 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CXorf58Q96LI9 332 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 OR14J1Q9UGF5 321 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 PCNX2A6NKB5 2137 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 GPR34Q9UPC5 381 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 NSG2Q9Y328 171 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 A0A1W2PPH5 198 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 HNRNPA1P09651 372 aaKnown RBP eCLIP13.27□□□□□ -0.28
COL7A1-201ENST00000328333 Q6ZRG5 221 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 CLEC1AQ8NC01 280 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 FAM3DQ96BQ1 224 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 NEURL3Q96EH8 262 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 ZFP92A6NM28 416 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 CCKARP32238 428 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF154Q13106 437 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 OLIG2Q13516 323 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 CLECL1Q8IZS7 167 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 PLEKHF2Q9H8W4 249 aa13.27□□□□□ -0.28
COL7A1-201ENST00000328333 DOT1LQ8TEK3 1739 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 SHC2P98077 582 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 Q6ZVL8 140 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 PXYLP1Q8TE99 480 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CDCA4Q9BXL8 241 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF541Q9H0D2 1346 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 ARRDC5A6NEK1 342 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 H3BQ06 376 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-201ENST00000328333 NME2P22392 152 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF93P35789 620 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-201ENST00000328333 EPHA4P54764 986 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CRMP1Q14194 572 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CLINT1Q14677 625 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 BEX5Q5H9J7 111 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 DPY19L2P2Q6ZN68 376 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CADM3Q8N126 398 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CYB561A3Q8NBI2 242 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 PDLIM5Q96HC4 596 aaKnown RBP13.27□□□□□ -0.29
COL7A1-201ENST00000328333 MAP3K3Q99759 626 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 GPR174Q9BXC1 333 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 LIN7CQ9NUP9 197 aaKnown RBP13.27□□□□□ -0.29
COL7A1-201ENST00000328333 FPGSQ05932 587 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 OR4F15Q8NGB8 312 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 SGPP1Q9BX95 441 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 PCNX1Q96RV3 2341 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 COL2A1P02458 1487 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-201ENST00000328333 M0R143 59 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CPNE6O95741 557 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 GLB1P16278 677 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 MTCP1P56278 107 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 MOGAT2Q3SYC2 334 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 TXNDC8Q6A555 127 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 PGBD5Q8N414 524 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 CTRCQ99895 268 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 GINS3Q9BRX5 216 aa13.27□□□□□ -0.29
COL7A1-201ENST00000328333 GALR3O60755 368 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 RPS15P62841 145 aaKnown RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 HIST1H3AP68431 136 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF680Q8NEM1 530 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 HLA-CQ95604 372 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZFYVE21Q9BQ24 234 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 RUNX2Q13950 521 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ANKRD16Q6P6B7 361 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 KLK6Q92876 244 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF566Q969W8 418 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 SLC2A9Q9NRM0 540 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 TFAP2AP05549 437 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 EIF4EP06730 217 aaKnown RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 JMJD7P0C870 316 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 CTRB1P17538 263 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 HNRNPA2B1P22626 353 aaKnown RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 IVDP26440 423 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ENTPD8Q5MY95 495 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 CTRB2Q6GPI1 263 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 OR14A16Q8NHC5 309 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 LMO3Q8TAP4 145 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 FAM71F1Q96KD3 344 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 SLC46A1Q96NT5 459 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 NDFIP1Q9BT67 221 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 RARRES3Q9UL19 164 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF860A6NHJ4 632 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF891A8MT65 544 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 PTBP3O95758 552 aaKnown RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 GHSRQ92847 366 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 AK3Q9UIJ7 227 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 CTU2Q2VPK5 515 aaKnown RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 VASNQ6EMK4 673 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 OR10J5Q8NHC4 309 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ALG12Q9BV10 488 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 LMAN1LQ9HAT1 526 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ELOVL3Q9HB03 270 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 TAF1P21675 1872 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms