RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 MBD3L5A6NJ08 208 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 PPP1R3DO95685 299 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 IGF2P01344 180 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 BMP5P22003 454 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 CRHBPP24387 322 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 RUNX1T1Q06455 604 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 KEAP1Q14145 624 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 CREB3L2Q70SY1 520 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 MBD3L2Q8NHZ7 208 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 OXGR1Q96P68 337 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 INIPQ9NRY2 104 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 FLVCR1Q9Y5Y0 555 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 FREM1Q5H8C1 2179 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 ARRDC5A6NEK1 342 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 CCDC160A6NGH7 325 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 E9PLN8 166 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 H7C1C5 153 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 IMPA2O14732 288 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 TMIGD3P0DMS9 266 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 CDH2P19022 906 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 PEX19P40855 299 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 SELENOPP49908 381 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 LCN6P62502 163 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 CAMK2DQ13557 499 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 ACKR1Q16570 336 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 LIX1LQ8IVB5 337 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 LRRC75AQ8NAA5 344 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 RASD2Q96D21 266 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 NMD3Q96D46 503 aaKnown RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 DMRTA2Q96SC8 542 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 TM9SF2Q99805 663 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 SH3GL3Q99963 347 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 VKORC1Q9BQB6 163 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 TBC1D23Q9NUY8 699 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 KLHL9Q9P2J3 617 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 RASD1Q9Y272 281 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 IER3IP1Q9Y5U9 82 aa16.13■□□□□ 0.17
HMGA1-201ENST00000311487 ADGRG4Q8IZF6 3080 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 E9PQ18 207 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 DNPH1O43598 174 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 NDUFB2O95178 105 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 RCBTB2O95199 551 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 YES1P07947 543 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 FCGR2AP12318 317 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 AGTR1P30556 359 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 PTGER4P35408 488 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 KIR2DL2P43627 348 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 BIDP55957 195 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 RNPS1Q15287 305 aaKnown RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 CDSNQ15517 529 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 NIPAL3Q6P499 406 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 ZNF773Q6PK81 442 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 SLC35D2Q76EJ3 337 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 SLC43A2Q8N370 569 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 CCDC120Q96HB5 630 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 TSSK6Q9BXA6 273 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 POLDIP3Q9BY77 421 aaKnown RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 ZNF346Q9UL40 294 aaKnown RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 NOSIPQ9Y314 301 aaKnown RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 COMMD3-BMI1R4GMX3 469 aa16.12■□□□□ 0.17
HMGA1-201ENST00000311487 PHF3Q92576 2039 aaKnown RBP16.12■□□□□ 0.17
HMGA1-201ENST00000311487 M0R129 80 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TRAF3IP2O43734 574 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TSPAN19P0C672 248 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 RPS6KA3P51812 740 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 SF3B4Q15427 424 aaKnown RBP eCLIP16.11■□□□□ 0.173e-7■■□□□ 12.6
HMGA1-201ENST00000311487 TMEM201Q5SNT2 666 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 RASSF6Q6ZTQ3 369 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 KCTD8Q6ZWB6 473 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 PXKQ7Z7A4 578 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 SYT14Q8NB59 555 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 SETD9Q8NE22 299 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 Q96M85 177 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 ERMAPQ96PL5 475 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TSPAN32Q96QS1 320 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 ETAA1Q9NY74 926 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 ERRFI1Q9UJM3 462 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 NDRG4Q9ULP0 352 aaKnown RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 CDH10Q9Y6N8 788 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 SLC35F4A4IF30 521 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TNFSF13O75888 250 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 OSMP13725 252 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GSTM3P21266 225 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 EEF1B2P24534 225 aaKnown RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TIMP3P35625 211 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 PRPS1P60891 318 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 ADORA2A-AS1P86434 159 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 IL5RAQ01344 420 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GTF2IRD2BQ6EKJ0 949 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 CASP12Q6UXS9 341 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 BTLAQ7Z6A9 289 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GTF2IRD2Q86UP8 949 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 ANKK1Q8NFD2 765 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 OR4Q3Q8NH05 313 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 SGCDQ92629 289 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 RND1Q92730 232 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GMPPAQ96IJ6 420 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-201ENST00000311487 PITX2Q99697 317 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GABARAPL3Q9BY60 117 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 IL20Q9NYY1 176 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms