RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TMEM71Q6P5X7 295 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 NAA40Q86UY6 237 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 OR56B4Q8NH76 319 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 WFDC5Q8TCV5 224 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 TXNL4BQ9NX01 149 aaKnown RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 CD14P08571 375 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 LIPCP11150 499 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 BCKDHBP21953 392 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 TM4SF18Q96CE8 201 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 ZNF436Q9C0F3 470 aaPredicted RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 P2RY12Q9H244 342 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 LAMA4Q16363 1823 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 FZD7O75084 574 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 OR7C1O76099 320 aaPredicted RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 HTR1FP30939 366 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 ZNF77Q15935 545 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 DLEU7Q6UYE1 221 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 MVB12AQ96EY5 273 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 GLIPR2Q9H4G4 154 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 NOX4Q9NPH5 578 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 SERTAD4Q9NUC0 356 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 SH3BGRL2Q9UJC5 107 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 AKAP11Q9UKA4 1901 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 ALS2Q96Q42 1657 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 TSPAN11A1L157 253 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 SULT1B1O43704 296 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 SYT6Q5T7P8 510 aaPredicted RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 FAM109AQ8N4B1 249 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 OR5T1Q8NG75 326 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 CHTF18Q8WVB6 975 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 INTS12Q96CB8 462 aaKnown RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 SGPP1Q9BX95 441 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 DUSP22Q9NRW4 184 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 DIMT1Q9UNQ2 313 aaKnown RBP17.66■□□□□ 0.42
UPF1-201ENST00000262803 OR8G3PP0DMU2 310 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 GLB1P16278 677 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 SLC35D2Q76EJ3 337 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 COX15Q7KZN9 410 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 CAMKMTQ7Z624 323 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 CLDN22Q8N7P3 220 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 OR51B6Q9H340 312 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 RANGRFQ9HD47 186 aaPredicted RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 HIF1ANQ9NWT6 349 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 NPPBP16860 134 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 PRPH2P23942 346 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 CASP3P42574 277 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 BIDP55957 195 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 POU4F3Q15319 338 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 MFSD12Q6NUT3 480 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 LIN37Q96GY3 246 aaPredicted RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 RTL8AQ9BWD3 113 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 PCED1AQ9H1Q7 454 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 ISYNA1Q9NPH2 558 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 PGAP2Q9UHJ9 254 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 PRRG2O14669 202 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 CTXN2P0C2S0 81 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 MAT1AQ00266 395 aaKnown RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 TNK1Q13470 666 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 APOOLQ6UXV4 268 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 H1FNTQ75WM6 255 aaPredicted RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 SLAMF9Q96A28 289 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 DCBLD2Q96PD2 775 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 GON7Q9BXV9 100 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 SLC23A2Q9UGH3 650 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 DDX60Q8IY21 1712 aaKnown RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 TNFRSF10AO00220 468 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 SNRPBP14678 240 aaKnown RBP17.65■□□□□ 0.42
UPF1-201ENST00000262803 P2RX1P51575 399 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 KDM4DQ6B0I6 523 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 OR5M10Q6IEU7 315 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 TEX19Q8NA77 164 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 OR6M1Q8NGM8 313 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 TNFRSF13CQ96RJ3 184 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 CACFD1Q9UGQ2 172 aa17.65■□□□□ 0.42
UPF1-201ENST00000262803 ACOD1A6NK06 481 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 PTBP1P26599 531 aaKnown RBP eCLIP17.64■□□□□ 0.424e-6■■□□□ 11.8
UPF1-201ENST00000262803 PCSK6P29122 969 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 SSTR2P30874 369 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 ETV5P41161 510 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 CSNK1G2P78368 415 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 NUDT8Q8WV74 236 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 RBMXL1Q96E39 390 aaKnown RBP17.64■□□□□ 0.42
UPF1-201ENST00000262803 BARHL1Q9BZE3 327 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 RAB22AQ9UL26 194 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 PCDHGA1Q9Y5H4 931 aa17.64■□□□□ 0.42
UPF1-201ENST00000262803 PRKRAO75569 313 aaKnown RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 NXPH2O95156 264 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 SNAPINO95295 136 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 OPN1LWP04000 364 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 JUNBP17275 347 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 POU3F3P20264 500 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 TLE4Q04727 773 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 OTUD1Q5VV17 481 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 GPR155Q7Z3F1 870 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 CD163Q86VB7 1156 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 RPS19BP1Q86WX3 136 aaKnown RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 MAML2Q8IZL2 1156 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 SARAFQ96BY9 339 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 AMBRA1Q9C0C7 1298 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 PLCXD1Q9NUJ7 323 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms