RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 FAM71CQ8NEG0 241 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 SMAP2Q8WU79 429 aaPredicted RBP17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 A0A1B0GX78 115 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 TMEM82A0PJX8 343 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 ANKRD61A6NGH8 418 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 TEAD1P28347 426 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 MRPS34P82930 218 aaKnown RBP17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 MC2RQ01718 297 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 DEFB123Q8N688 67 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 PPA2Q9H2U2 334 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 RAB9BQ9NP90 201 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 NRIP3Q9NQ35 241 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 FADS1O60427 444 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 M6PRP20645 277 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 CYB561P49447 251 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 MZT1Q08AG7 82 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 GLYATL3Q5SZD4 288 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 BANF2Q9H503 90 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 ANKRD19PQ9H560 264 aa17.22■□□□□ 0.35
SMARCC1-201ENST00000254480 PRAMEF25A6NGN4 478 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PRAF2O60831 178 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 ZIC2O95409 532 aaPredicted RBP17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 OR2T7P0C7T2 308 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 BTG2P78543 158 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 FAM71E1Q6IPT2 247 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 OR51D1Q8NGF3 324 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 OR2T27Q8NH04 317 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 FAM174AQ8TBP5 190 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 OCSTAMPQ9BR26 566 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 C1orf196B1AJZ1 125 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PPP2CBP62714 309 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PPP2CAP67775 309 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 EBPQ15125 230 aaKnown RBP17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 CORO6Q6QEF8 472 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 Q6ZTK2 550 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 SYT13Q7L8C5 426 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 DRAXINQ8NBI3 349 aaPredicted RBP17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 MRI1Q9BV20 369 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 KIR3DX1Q9H7L2 352 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 A4GALTQ9NPC4 353 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 OR5K3A6NET4 321 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 ZNF587BE7ETH6 402 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 SSX4O60224 188 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PHLDA2Q53GA4 152 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 DMRTC1Q5HYR2 192 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 EMC7Q9NPA0 242 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PIGLQ9Y2B2 252 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 ASCC3Q8N3C0 2202 aaKnown RBP17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PIGBOS1A0A0B4J2F0 54 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 A0A1W2PS29 197 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 HS3ST1O14792 307 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 MMP11P24347 488 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 GOT1L1Q8NHS2 421 aaPredicted RBP17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 FER1L6-AS2Q96M78 137 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 GPR160Q9UJ42 338 aa17.21■□□□□ 0.35
SMARCC1-201ENST00000254480 PDLIM3Q53GG5 364 aaPredicted RBP17.21■□□□□ 0.34
SMARCC1-201ENST00000254480 HAVCR2Q8TDQ0 301 aa17.21■□□□□ 0.34
SMARCC1-201ENST00000254480 UNKLQ9H9P5 680 aaKnown RBP17.21■□□□□ 0.34
SMARCC1-201ENST00000254480 A0A1W2PNR3 127 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 D6RAR5 112 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 GMDSO60547 372 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 SLC2A10O95528 541 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 HOXA9P31269 272 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 EPHA5P54756 1037 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 PYCR3Q53H96 274 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 CPEB2Q7Z5Q1 589 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 LIN7BQ9HAP6 207 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 LOXHD1Q8IVV2 1947 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 MAGEB4O15481 346 aaPredicted RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 SRP9P49458 86 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 TMEM71Q6P5X7 295 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.2■□□□□ 0.345e-7■■■■□ 22.7
SMARCC1-201ENST00000254480 BIN3Q9NQY0 253 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 LCMT2O60294 686 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 NSA2O95478 260 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 CLINT1Q14677 625 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 ADPRMQ3LIE5 342 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 PLK5Q496M5 336 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 ZNF468Q5VIY5 522 aaPredicted RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 C1orf140Q5VVS0 124 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 NXNL2Q5VZ03 156 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 MSI2Q96DH6 328 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 ZDHHC5Q9C0B5 715 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 RNF167Q9H6Y7 350 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 TUBG2Q9NRH3 451 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 A0A1W2PR48 441 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 GLI4P10075 376 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 CHATP28329 748 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 MRPS10P82664 201 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 DUSP2Q05923 314 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 CMPK2Q5EBM0 449 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 RNLSQ5VYX0 342 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 SPRED1Q7Z699 444 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 SLA2Q9H6Q3 261 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 KITLGP21583 273 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 RRADP55042 308 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 SCGB2A2Q13296 93 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 ZNF767PQ75MW2 155 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 ZNF687Q8N1G0 1237 aa17.2■□□□□ 0.34
SMARCC1-201ENST00000254480 WDSUB1Q8N9V3 476 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms