RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 A0A1W2PPC1 479 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TRBC2A0A5B9 178 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 DRGXA6NNA5 263 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 J3KRW8 73 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MEIS2O14770 477 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 GPR182O15218 404 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 H1F0P07305 194 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3HP0C7X1 549 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 AKAIN1P0CW23 69 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 GSTM3P21266 225 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ARL3P36405 182 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MVDP53602 400 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 WNT3P56703 355 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ARF3P61204 181 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HIST1H3AP68431 136 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ARF1P84077 181 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF763Q0D2J5 394 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TSPAN31Q12999 210 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RPS26P11Q5JNZ5 115 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 Q6ZRG5 221 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PIM3Q86V86 326 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HIST3H2BBQ8N257 126 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 OR10H4Q8NGA5 316 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 GPR119Q8TDV5 335 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SPRYD4Q8WW59 207 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 XAGE5Q8WWM1 108 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SNX22Q96L94 193 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SLC35A5Q9BS91 424 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 VAMP8Q9BV40 100 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LGR4Q9BXB1 951 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TBL1XR1Q9BZK7 514 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 FKBP11Q9NYL4 201 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LPAR3Q9UBY5 353 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PIN4Q9Y237 131 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SNX10Q9Y5X0 201 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 UNC119BA6NIH7 251 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PPP5D1E7EU14 171 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 FAAHO00519 579 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 B4GALT3O60512 393 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CA11O75493 328 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RBMXL2O75526 392 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MT-CO2P00403 227 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LPOP22079 712 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HSD3B2P26439 372 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ITPKBP27987 946 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RBX1P62877 108 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SELENOWP63302 87 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HSF1Q00613 529 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HMGCS1Q01581 520 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SCARB2Q14108 478 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CDPF1Q6NVV7 123 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 DLK2Q6UY11 383 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 C4orf19Q8IY42 314 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 OR52I2Q8NH67 350 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 GALNT14Q96FL9 552 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM169Q96HH4 297 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PPP1R16AQ96I34 528 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HHIPL1Q96JK4 782 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 P2RX7Q99572 595 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 WDR18Q9BV38 432 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SELENOIQ9C0D9 397 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 OR2J1Q9GZK6 312 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NRSN2Q9GZP1 204 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ELOVL4Q9GZR5 314 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF700Q9H0M5 742 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 AUNIPQ9H7T9 357 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 EXOSC3Q9NQT5 275 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RBM22Q9NW64 420 aaKnown RBP eCLIP5.3□□□□□ -1.561e-6■■■■■ 27.8
SCN1A-216ENST00000637968 BET1LQ9NYM9 111 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NUDT4Q9NZJ9 180 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RHCGQ9UBD6 479 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ROBO1Q9Y6N7 1651 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CICQ96RK0 1608 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PRAMEF27A3QJZ7 478 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PRAMEF25A6NGN4 478 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NKX6-3A6NJ46 265 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TSPAN6O43657 245 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PRAMEF4O60810 478 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ADORA2BP29275 332 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 HNRNPA3P51991 378 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TAS2R38P59533 333 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CDK3Q00526 305 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PMS2P11Q13670 270 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PRAMEF9Q5VWM5 478 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LINC00471Q8N535 108 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 OR8S1Q8NH09 359 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 FAM3CQ92520 227 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MOAP1Q96BY2 351 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RSPRY1Q96DX4 576 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 FAM210BQ96KR6 192 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NIPSNAP3BQ9BS92 247 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NUDT9Q9BW91 350 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ZCCHC3Q9NUD5 404 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SLC2A6Q9UGQ3 507 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PPP1R3CQ9UQK1 317 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MYO18AQ92614 2054 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 PYCARD-AS1I3L0S3 204 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CDC14BO60729 498 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TBX19O60806 448 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MTHFD2P13995 350 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms