RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 HTR2AP28223 471 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 PRKAR1BP31321 381 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 TMEM33P57088 247 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 LMO4P61968 165 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 HOXC5Q00444 222 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 MFSD13AQ14CX5 517 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 RGNQ15493 299 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 KRT71Q3SY84 523 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 FAM91A1Q658Y4 838 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 CLDND2Q8NHS1 167 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 DNAJA4Q8WW22 397 aaPredicted RBP14.12□□□□□ -0.15
CLN3-255ENST00000637100 GTF2H4Q92759 462 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 PLA2G12AQ9BZM1 189 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 DYNLRB1Q9NP97 96 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 KLHL14Q9P2G3 628 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 REV1Q9UBZ9 1251 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 MEGF8Q7Z7M0 2845 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 TRAV36DV7A0A075B6V5 113 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 A0A1B0GWA3 101 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 SH3PXD2BA1X283 911 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 M0R233 179 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 RGS16O15492 202 aaPredicted RBP14.11□□□□□ -0.15
CLN3-255ENST00000637100 AKAP8O43823 692 aaKnown RBP14.11□□□□□ -0.15
CLN3-255ENST00000637100 TFP02787 698 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 HPXP02790 462 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 NUDT7P0C024 238 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 COL8A2P25067 703 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 MRPL19P49406 292 aaKnown RBP14.11□□□□□ -0.15
CLN3-255ENST00000637100 ARFIP2P53365 341 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 NPRL3Q12980 569 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 FADDQ13158 208 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 C1DQ13901 141 aaKnown RBP14.11□□□□□ -0.15
CLN3-255ENST00000637100 GSG1Q2KHT4 349 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 ATG16L1Q676U5 607 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 KRT80Q6KB66 452 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 DHRS4L2Q6PKH6 230 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 USP43Q70EL4 1123 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 GLCCI1Q86VQ1 547 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 COMTD1Q86VU5 262 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 CARM1Q86X55 608 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 WDFY1Q8IWB7 410 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 SCAIQ8N9R8 606 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 BBS10Q8TAM1 723 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 RDH5Q92781 318 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 TMEM186Q96B77 213 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 MS4A3Q96HJ5 214 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 ITCHQ96J02 903 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 PAIP1Q9H074 479 aaKnown RBP14.11□□□□□ -0.15
CLN3-255ENST00000637100 ZNF385DQ9H6B1 395 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 THAP1Q9NVV9 213 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 CORINQ9Y5Q5 1042 aa14.11□□□□□ -0.15
CLN3-255ENST00000637100 A0A087WUJ7 227 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 TMEM89A2RUT3 159 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 FAM157AC9JC47 383 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 RP2O75695 350 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 HLA-HP01893 362 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 BGLAPP02818 100 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 HLA-DOBP13765 273 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 WDR4P57081 412 aaKnown RBP14.1□□□□□ -0.15
CLN3-255ENST00000637100 IL1RL1Q01638 556 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 REP15Q6BDI9 236 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 ULK3Q6PHR2 472 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 TPK1Q9H3S4 243 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 RMND5AQ9H871 391 aa14.1□□□□□ -0.15
CLN3-255ENST00000637100 MGAM2Q2M2H8 2515 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 TMEM247A6NEH6 219 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 M0R3G1 203 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 MSMBP08118 114 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 GTF2E2P29084 291 aaKnown RBP14.09□□□□□ -0.15
CLN3-255ENST00000637100 C12orf54Q6X4T0 127 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 C1orf229Q6ZS94 237 aaPredicted RBP14.09□□□□□ -0.15
CLN3-255ENST00000637100 PXKQ7Z7A4 578 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 LRP11Q86VZ4 500 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 UEVLDQ8IX04 471 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 MAL2Q969L2 176 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 YIPF5Q969M3 257 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 RAD21L1Q9H4I0 556 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 HIF1ANQ9NWT6 349 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 MRPL39Q9NYK5 338 aaKnown RBP14.09□□□□□ -0.15
CLN3-255ENST00000637100 FBXL3Q9UKT7 428 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 NOX1Q9Y5S8 564 aa14.09□□□□□ -0.15
CLN3-255ENST00000637100 IGLV3-9A0A075B6K5 115 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 A0A0B4J2E0 115 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 A0A1B0GX12 115 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 CLIC1O00299 241 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 WNT9BO14905 357 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 TPST2O60704 377 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 SEC14L2O76054 403 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 ANP32DO95626 131 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 GAAP10253 952 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 ARAFP10398 606 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 GPR6P46095 362 aaPredicted RBP14.08□□□□□ -0.16
CLN3-255ENST00000637100 POLR2JP52435 117 aaKnown RBP14.08□□□□□ -0.16
CLN3-255ENST00000637100 SEC24CP53992 1094 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 SLC18A1P54219 525 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 RPS23P62266 143 aaKnown RBP14.08□□□□□ -0.16
CLN3-255ENST00000637100 RAB1AP62820 205 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 CCNIQ14094 377 aa14.08□□□□□ -0.16
CLN3-255ENST00000637100 TRMT5Q32P41 509 aaKnown RBP14.08□□□□□ -0.16
CLN3-255ENST00000637100 MMEL1Q495T6 779 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms