RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TAS2R16Q9NYV7 291 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 NPIPB13A6NJU9 1138 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 NPIPB4C9JG80 1138 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 RAMP1O60894 148 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 FADS2O95864 444 aaKnown RBP12.77□□□□□ -0.36
USP39-220ENST00000613444 GYPBP06028 91 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 STARP49675 285 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 SUCLG1P53597 346 aaKnown RBP12.77□□□□□ -0.36
USP39-220ENST00000613444 SLC35A1P78382 337 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 RAB40BQ12829 278 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 PAQR6Q6TCH4 344 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 IGFL3Q6UXB1 125 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 PXKQ7Z7A4 578 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 OR9Q1Q8NGQ5 310 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 SMPDL3BQ92485 455 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 MUL1Q969V5 352 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 DTNBP1Q96EV8 351 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 TEAD3Q99594 435 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 FGF20Q9NP95 211 aaPredicted RBP12.77□□□□□ -0.36
USP39-220ENST00000613444 QPCTLQ9NXS2 382 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 EXOGQ9Y2C4 368 aaKnown RBP12.77□□□□□ -0.36
USP39-220ENST00000613444 PCDHGA9Q9Y5G4 932 aaKnown RBP12.77□□□□□ -0.36
USP39-220ENST00000613444 COMMD3-BMI1R4GMX3 469 aa12.77□□□□□ -0.36
USP39-220ENST00000613444 AQP7P3A6NL99 342 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 GJE1A6NN92 205 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 J3QRE1 110 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 TNFSF11O14788 317 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 SERPINI2O75830 405 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 APOL3O95236 402 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 PAICSP22234 425 aaKnown RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 ID4P47928 161 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 PPIAP62937 165 aaKnown RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 PLGLB1Q02325 96 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 TBCEQ15813 527 aaPredicted RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 LEG1Q6P5S2 330 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 GHDCQ8N2G8 530 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 TMEM80Q96HE8 168 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 OR51V1Q9H2C8 321 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 ASB6Q9NWX5 421 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 H2AFY2Q9P0M6 372 aaPredicted RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 WARS2Q9UGM6 360 aaKnown RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 DIMT1Q9UNQ2 313 aaKnown RBP12.77□□□□□ -0.37
USP39-220ENST00000613444 NCOR2Q9Y618 2525 aa12.77□□□□□ -0.37
USP39-220ENST00000613444 TRAV17A0A0B4J275 112 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 LOC102725191A0A1B0GVB3 256 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 LINC01387J3KSC0 135 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 K7ENP7 123 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 INMTO95050 263 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SLC25A1P53007 311 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 HSF1Q00613 529 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 RUNX1T1Q06455 604 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 TMED1Q13445 227 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 DOC2BQ14184 412 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 RAB39AQ14964 217 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 KLHL12Q53G59 568 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 KLHL22Q53GT1 634 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 RNLSQ5VYX0 342 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 INO80CQ6PI98 192 aaPredicted RBP12.76□□□□□ -0.37
USP39-220ENST00000613444 TRILQ7L0X0 811 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SHFQ7M4L6 423 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 OR4F15Q8NGB8 312 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ZNF649Q9BS31 505 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SRXN1Q9BYN0 137 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 RBM38Q9H0Z9 239 aaKnown RBP12.76□□□□□ -0.37
USP39-220ENST00000613444 SLC6A15Q9H2J7 730 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ZDHHC11Q9H8X9 412 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ACKR4Q9NPB9 350 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 HAO2Q9NYQ3 351 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SLC22A31A6NKX4 558 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 H7C1C5 153 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 DCTN6O00399 190 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 PDGFAP04085 211 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SPI1P17947 270 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 GSTT1P30711 240 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ACVR1BP36896 505 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 LHX2P50458 406 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 AGFG1P52594 562 aaKnown RBP12.76□□□□□ -0.37
USP39-220ENST00000613444 GP2P55259 537 aaKnown RBP12.76□□□□□ -0.37
USP39-220ENST00000613444 LCN6P62502 163 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 MELKQ14680 651 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 LINC01590Q5TEZ4 76 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 UBE2UQ5VVX9 321 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ESPNLQ6ZVH7 1005 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ASB18Q6ZVZ8 466 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SLC22A16Q86VW1 577 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 JAZF1Q86VZ6 243 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 FAM109AQ8N4B1 249 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SVOPQ8N4V2 548 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 ASB10Q8WXI3 467 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 TXNDC15Q96J42 360 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 TSSK2Q96PF2 358 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 SNX18Q96RF0 628 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 CLEC2DQ9UHP7 191 aa12.76□□□□□ -0.37
USP39-220ENST00000613444 A0A1W2PRG6 482 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 ARHGEF9O43307 516 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 TRAF3IP2O43734 574 aaPredicted RBP12.75□□□□□ -0.37
USP39-220ENST00000613444 SEC14L2O76054 403 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 PTHP01270 115 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 IGHA1P01876 353 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 LCKP06239 509 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms