RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PLEKHF2Q9H8W4 249 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 TBC1D23Q9NUY8 699 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ENOPH1Q9UHY7 261 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 GMPPBQ9Y5P6 360 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 CDH10Q9Y6N8 788 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 TRAV36DV7A0A075B6V5 113 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 OR2M5A3KFT3 312 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 ZAR1LA6NP61 321 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 H3BML4 177 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 M0R129 80 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 NPIPB7O75200 414 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 BGLAPP02818 100 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 OPN1LWP04000 364 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 TMIGD3P0DMS9 266 aaPredicted RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 TFPIP10646 304 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 MYF6P23409 242 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 SHC1P29353 583 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 GGT2P36268 569 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 EIF1P41567 113 aaKnown RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 AGFG1P52594 562 aaKnown RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 FXYD6P3P58550 94 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 SELENBP1Q13228 472 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 MED21Q13503 144 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 PTGES3Q15185 160 aaKnown RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 TMEM44Q2T9K0 475 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 ZNF691Q5VV52 312 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 C1orf140Q5VVS0 124 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 C3orf33Q6P1S2 294 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 USP51Q70EK9 711 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 GTPBP8Q8N3Z3 284 aaPredicted RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 C9orf106Q8NAJ2 232 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 FAM83FQ8NEG4 500 aaPredicted RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 WFDC11Q8NEX6 87 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 OR51A7Q8NH64 312 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 OR14L1PQ8NHC6 308 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 LINC01560Q8TB33 94 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 TEX47Q8TBZ9 253 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 ZPLD1Q8TCW7 415 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 TAAR8Q969N4 342 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 SAMD8Q96LT4 415 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 MUS81Q96NY9 551 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 PTDSS2Q9BVG9 487 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 SFXN3Q9BWM7 321 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 OR2B2Q9GZK3 357 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 SERINC1Q9NRX5 453 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 UBAP1Q9NZ09 502 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 IL20RAQ9UHF4 553 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 NDRG4Q9ULP0 352 aaKnown RBP11.3□□□□□ -0.6
UPF1-208ENST00000600012 SIGLEC7Q9Y286 467 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 ARID1AO14497 2285 aa11.3□□□□□ -0.6
UPF1-208ENST00000600012 AHSA1O95433 338 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 IGF2P01344 180 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 CPN1P15169 458 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 ZNF17P17021 662 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 ADH6P28332 368 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 HOXC12P31275 282 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 B3GALT5-AS1P59052 145 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 PDK3Q15120 406 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SYT14P1Q58G82 188 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 CLEC12AQ5QGZ9 265 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SLX4IPQ5VYV7 408 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 THSD4Q6ZMP0 1018 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 OAFQ86UD1 273 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 C8orf59Q8N0T1 100 aaPredicted RBP11.29□□□□□ -0.6
UPF1-208ENST00000600012 CLDN22Q8N7P3 220 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 OR4Q3Q8NH05 313 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 FAM81AQ8TBF8 368 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SMPDL3BQ92485 455 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SLC25A36Q96CQ1 311 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 DDIT4LQ96D03 193 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 ARL5BQ96KC2 179 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 C18orf12Q96KH6 178 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 DACH2Q96NX9 599 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 TNFRSF13CQ96RJ3 184 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 TM9SF2Q99805 663 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 RBM24Q9BX46 236 aaKnown RBP11.29□□□□□ -0.6
UPF1-208ENST00000600012 TSSK6Q9BXA6 273 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 OR52D1Q9H346 318 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SLC25A19Q9HC21 320 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SEC14L4Q9UDX3 406 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 ZNF337Q9Y3M9 751 aa11.29□□□□□ -0.6
UPF1-208ENST00000600012 SPIN1Q9Y657 262 aaPredicted RBP11.29□□□□□ -0.6
UPF1-208ENST00000600012 A0A1W2PNR3 127 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 ZNF208O43345 1280 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 PTP4A3O75365 173 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 HRGP04196 525 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 IMPDH2P12268 514 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 ELK4P28324 431 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 SFTPDP35247 375 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 IDUAP35475 653 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 SLC9A3P48764 834 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 IL5RAQ01344 420 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 FHL1Q13642 323 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 GINS1Q14691 196 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 ZBED5Q49AG3 693 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 FAM69AQ5T7M9 428 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 C12orf73Q69YU5 71 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 KRT80Q6KB66 452 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 SMARCD3Q6STE5 483 aa11.28□□□□□ -0.6
UPF1-208ENST00000600012 C5orf46Q6UWT4 87 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms