RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ADAM21Q9UKJ8 722 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 ARPC4-TTLL3A0A0A6YYG9 625 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 J3KTA2 159 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 OR7A10O76100 309 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF682O95780 498 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 SEMG1P04279 462 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ADORA3P0DMS8 318 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ROR2Q01974 943 aaKnown RBP14.13□□□□□ -0.15
TRIM28-213ENST00000598355 KEAP1Q14145 624 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 IQCCQ4KMZ1 466 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 SAMD4BQ5PRF9 694 aaKnown RBP14.13□□□□□ -0.15
TRIM28-213ENST00000598355 C9orf135Q5VTT2 229 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 GLYATQ6IB77 296 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF627Q7L945 461 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 C20orf196Q8IYI0 205 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 C10orf53Q8N6V4 93 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 RNF148Q8N7C7 305 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF611Q8N823 705 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 CCDC197Q8NCU1 140 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 RBM15BQ8NDT2 890 aaKnown RBP14.13□□□□□ -0.15
TRIM28-213ENST00000598355 OR52N5Q8NH56 324 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 BCL2L2Q92843 193 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-213ENST00000598355 FAM162AQ96A26 154 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 C7orf34Q96L11 122 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ANKRD19PQ9H560 264 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 UBTD1Q9HAC8 227 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 MED29Q9NX70 200 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ADA2Q9NZK5 511 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 MAGEL2Q9UJ55 1249 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 ITGB1BP2Q9UKP3 347 aa14.13□□□□□ -0.15
TRIM28-213ENST00000598355 FLNAP21333 2647 aaKnown RBP14.13□□□□□ -0.15
TRIM28-213ENST00000598355 SLC35F4A4IF30 521 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 NPIPB13A6NJU9 1138 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 SHISA9B4DS77 424 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 NPIPB4C9JG80 1138 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 TMCC2O75069 709 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 CD3EP07766 207 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 PTAFRP25105 342 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 MNAT1P51948 309 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 RPS4XP62701 263 aaKnown RBP14.12□□□□□ -0.15
TRIM28-213ENST00000598355 TBRG1Q3YBR2 411 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 PHYHD1Q5SRE7 291 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 C16orf89Q6UX73 402 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 NANOGNBQ7Z5D8 188 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 KRTAP1-3Q8IUG1 177 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 FAM86B1Q8N7N1 296 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 FAM156AQ8NDB6 213 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 KBTBD8Q8NFY9 601 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 OR6X1Q8NH79 312 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 SGTBQ96EQ0 304 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 TXNDC15Q96J42 360 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 SEPHS2Q99611 448 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 GPR35Q9HC97 309 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 SAMD4AQ9UPU9 718 aaKnown RBP14.12□□□□□ -0.15
TRIM28-213ENST00000598355 MED31Q9Y3C7 131 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 MAGED1Q9Y5V3 778 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-213ENST00000598355 ENPP4Q9Y6X5 453 aa14.12□□□□□ -0.15
TRIM28-213ENST00000598355 A0A1W2PR80 420 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 PIP5K1CO60331 668 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 HOXB1P14653 301 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 IFNGR1P15260 489 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 PAX7P23759 505 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 LSM11P83369 360 aaKnown RBP eCLIP14.11□□□□□ -0.152e-9■□□□□ 10.1
TRIM28-213ENST00000598355 RPL18Q07020 188 aaKnown RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 TRAM2Q15035 370 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF672Q499Z4 452 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 HIKESHIQ53FT3 197 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ARFGEF3Q5TH69 2177 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 HMBOX1Q6NT76 420 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ANKRD16Q6P6B7 361 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 TMEM108Q6UXF1 575 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 DEFB107AQ8IZN7 70 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 GPR137CQ8N3F9 429 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ACOT11Q8WXI4 607 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 AKAP1Q92667 903 aaKnown RBP eCLIP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 PIGTQ969N2 578 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF837Q96EG3 531 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 DHRS1Q96LJ7 313 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ADAD1Q96M93 576 aaKnown RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 CDRT15Q96T59 188 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 EMC6Q9BV81 110 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 NDUFAF4Q9P032 175 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 CRNNQ9UBG3 495 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-213ENST00000598355 MGAT4BQ9UQ53 548 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 HIF3AQ9Y2N7 669 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 ACANP16112 2415 aa14.11□□□□□ -0.15
TRIM28-213ENST00000598355 A0A087WUU8 490 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF99A8MXY4 864 aaPredicted RBP14.1□□□□□ -0.15
TRIM28-213ENST00000598355 C11orf98E9PRG8 122 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 ARPC2O15144 300 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 KRT33AO76009 404 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 DANCRP0C864 163 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 T-ENOLP0DO92 83 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 PAX1P15863 534 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 FUT1P19526 365 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 AHCYP23526 432 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 CD40P25942 277 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 HOXC12P31275 282 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 IFNA8P32881 189 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 YAP1P46937 504 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms