RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TMPRSS11FQ6ZWK6 438 aa22.71■■□□□ 1.23
TRIM28-204ENST00000594806 S100PBPQ96BU1 408 aa22.71■■□□□ 1.23
TRIM28-204ENST00000594806 SEPHS2Q99611 448 aa22.71■■□□□ 1.23
TRIM28-204ENST00000594806 CADM1Q9BY67 442 aaKnown RBP22.71■■□□□ 1.23
TRIM28-204ENST00000594806 CIB4A0PJX0 185 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 ZNF587BE7ETH6 402 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 CTAG2O75638 210 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 LYZL6O75951 148 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 DIRAS1O95057 198 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 SAGP10523 405 aaPredicted RBP22.7■■□□□ 1.22
TRIM28-204ENST00000594806 DNAJA1P31689 397 aaKnown RBP22.7■■□□□ 1.22
TRIM28-204ENST00000594806 SPIBQ01892 262 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 RPL18Q07020 188 aaKnown RBP22.7■■□□□ 1.22
TRIM28-204ENST00000594806 TIMM23BQ5SRD1 257 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 HDDC2Q7Z4H3 204 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 BOD1Q96IK1 185 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 MUS81Q96NY9 551 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 OR2M2Q96R28 347 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 NGBQ9NPG2 151 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 HIF3AQ9Y2N7 669 aa22.7■■□□□ 1.22
TRIM28-204ENST00000594806 CELSR2Q9HCU4 2923 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 A0A1W2PRG6 482 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 NPIPB13A6NJU9 1138 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 EFCAB9A8MZ26 197 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 NPIPB4C9JG80 1138 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 RPL36A-HNRNPH2H7BZ11 118 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 ITGA5P08648 1049 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 TBPL2Q6SJ96 375 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 SLC35D2Q76EJ3 337 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 TMEM123Q8N131 208 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 GPR137CQ8N3F9 429 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 C17orf78Q8N4C9 275 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 OR6X1Q8NH79 312 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 FUZQ9BT04 418 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 INIPQ9NRY2 104 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 RASSF1Q9NS23 344 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 STX18Q9P2W9 335 aaKnown RBP22.69■■□□□ 1.22
TRIM28-204ENST00000594806 ABCA4P78363 2273 aa22.69■■□□□ 1.22
TRIM28-204ENST00000594806 SLC35F4A4IF30 521 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 RAP2AP10114 183 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 IFNGR1P15260 489 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 MAKP20794 623 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 HMGA2P52926 109 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 SH3BGRP55822 239 aaPredicted RBP22.68■■□□□ 1.22
TRIM28-204ENST00000594806 RPS4XP62701 263 aaKnown RBP22.68■■□□□ 1.22
TRIM28-204ENST00000594806 FLOT2Q14254 428 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 TAF11Q15544 211 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 OAFQ86UD1 273 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 MUCL1Q96DR8 90 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 TXNDC15Q96J42 360 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 NDEL1Q9GZM8 345 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 LRMDAQ9H2I8 198 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 B3GAT2Q9NPZ5 323 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 MED29Q9NX70 200 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 TMCC3Q9ULS5 477 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 POMPQ9Y244 141 aa22.68■■□□□ 1.22
TRIM28-204ENST00000594806 TRBV4-1A0A0J9YWV2 114 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 SH3PXD2BA1X283 911 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 OR5H1A6NKK0 313 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 UPK3AO75631 287 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 BCL10O95999 233 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 THBDP07204 575 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 PAX7P23759 505 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 RRM2P31350 389 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 IFNGR2P38484 337 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 AQP2P41181 271 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 DAP3P51398 398 aaKnown RBP22.67■■□□□ 1.22
TRIM28-204ENST00000594806 PRPS1P60891 318 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 LSM11P83369 360 aaKnown RBP eCLIP22.67■■□□□ 1.22
TRIM28-204ENST00000594806 TSC22D1Q15714 1073 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 GABRA6Q16445 453 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 HMBOX1Q6NT76 420 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 CCDC121Q6ZUS5 278 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 C22orf34Q6ZV56 151 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 TMEM200AQ86VY9 491 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 C20orf196Q8IYI0 205 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 LINC00471Q8N535 108 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 OR4K5Q8NGD3 323 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 OR52J3Q8NH60 311 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 ZC3HAV1LQ96H79 300 aaKnown RBP22.67■■□□□ 1.22
TRIM28-204ENST00000594806 ALPK1Q96QP1 1244 aa22.67■■□□□ 1.22
TRIM28-204ENST00000594806 CENPBD1B2RD01 187 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 EBAG9O00559 213 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 RAD51DO75771 328 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 SERPINI2O75830 405 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 BIDP55957 195 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 GK3PQ14409 553 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 TAB1Q15750 504 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 STK11Q15831 433 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 ALG10Q5BKT4 473 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 BEX5Q5H9J7 111 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 SLC25A44Q96H78 314 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-204ENST00000594806 EMC6Q9BV81 110 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 SLC7A8Q9UHI5 535 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 AURKCQ9UQB9 309 aa22.66■■□□□ 1.22
TRIM28-204ENST00000594806 DHRS12A0PJE2 317 aa22.65■■□□□ 1.22
TRIM28-204ENST00000594806 CLOCKO15516 846 aa22.65■■□□□ 1.22
TRIM28-204ENST00000594806 OMPP47874 163 aa22.65■■□□□ 1.22
TRIM28-204ENST00000594806 NR1H2P55055 460 aa22.65■■□□□ 1.22
TRIM28-204ENST00000594806 ROR2Q01974 943 aaKnown RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms