RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LYRM4Q9HD34 91 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 CYTH4Q9UIA0 394 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ZNF221Q9UK13 617 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 EIF3LQ9Y262 564 aaKnown RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 TDRD15B5MCY1 1934 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 IGHV4OR15-8A0A075B7B6 117 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 IGHV4-61A0A0C4DH41 118 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 LY6G6EA0A0G2JKS1 128 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 A0A1W2PPV4 95 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 FRG2CA6NGY1 282 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PRR23D1E9PI22 279 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 TRAFD1O14545 582 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 ZNF195O14628 629 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PPIHO43447 177 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 ZG16O60844 167 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 KHDRBS3O75525 346 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 OR2F2O95006 317 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 LY6G6DO95868 133 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 IGHV4-59P01825 116 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 H2BFMP0C1H6 154 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PRR23D2P0DMB1 279 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 IMPDH1P20839 514 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 CRYBB2P43320 205 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 HOXA1P49639 335 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 OTUD4Q01804 1114 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 SLAQ13239 276 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 EIF2B1Q14232 305 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 PDGFRLQ15198 375 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 SLC5A12Q1EHB4 618 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 FAM83EQ2M2I3 478 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 SLC25A52Q3SY17 297 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 TEX44Q53QW1 395 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PRR30Q53SZ7 412 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 DMRTC1Q5HYR2 192 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 MLIPQ5VWP3 458 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PDPK2PQ6A1A2 396 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PAQR6Q6TCH4 344 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 ENPP6Q6UWR7 440 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 SCARA5Q6ZMJ2 495 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 ADAMTSL5Q6ZMM2 481 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 SCD5Q86SK9 330 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 COMTD1Q86VU5 262 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 TPRA1Q86W33 373 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 TRIM69Q86WT6 500 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 HPS6Q86YV9 775 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 CCDC50Q8IVM0 306 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PQLC3Q8N755 202 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 NRACQ8N912 160 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 KBTBD3Q8NAB2 608 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 OR1K1Q8NGR3 316 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 ZNF461Q8TAF7 563 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 RHEBL1Q8TAI7 183 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 HPSE2Q8WWQ2 592 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 CERS2Q96G23 380 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 NKX3-1Q99801 234 aaPredicted RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 TUBGCP2Q9BSJ2 902 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PINK1Q9BXM7 581 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 EBF2Q9HAK2 575 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 MRPS30Q9NP92 439 aaKnown RBP4.87□□□□□ -1.63
VPS53-219ENST00000576019 NT5MQ9NPB1 228 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 CCNB1IP1Q9NPC3 277 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 TAS2R16Q9NYV7 291 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 UBAP1Q9NZ09 502 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 VWFP04275 2813 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 DOCK9Q9BZ29 2069 aa4.87□□□□□ -1.63
VPS53-219ENST00000576019 PDLIM1O00151 329 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 SURF4O15260 269 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 RGS16O15492 202 aaPredicted RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 PRKNO60260 465 aaPredicted RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 SH3BGRLO75368 114 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 SERPIND1P05546 499 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 H2AFXP16104 143 aaPredicted RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 OTX1P32242 354 aaPredicted RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 SAA4P35542 130 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OPRD1P41143 372 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ZFP36L2P47974 494 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 SLC8A3P57103 927 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 PAX5Q02548 391 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 TLE4Q04727 773 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ZNF630Q2M218 657 aaPredicted RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 BEX5Q5H9J7 111 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ZNF626Q68DY1 528 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 SLC25A25Q6KCM7 469 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 SLC25A47Q6Q0C1 308 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 MRPL10Q7Z7H8 261 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 MRGPRGQ86SM5 289 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 PIM3Q86V86 326 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ERI1Q8IV48 349 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 DHRSXQ8N5I4 330 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OR7G2Q8NG99 324 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OR9Q2Q8NGE9 314 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OR4A15Q8NGL6 344 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OR6F1Q8NGZ6 308 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 MARCH1Q8TCQ1 289 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 RAB1CQ92928 201 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ST6GAL2Q96JF0 529 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ZNF354BQ96LW1 612 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 FAM218AQ96MZ4 157 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 PAIP2Q9BPZ3 127 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 GPR174Q9BXC1 333 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms