RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 VNN3Q9NY84 501 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RASL12Q9NYN1 266 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KLHL8Q9P2G9 620 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 FBXL3Q9UKT7 428 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CLEC4EQ9ULY5 219 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ICKQ9UPZ9 632 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SLC22A13Q9Y226 551 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZFP30Q9Y2G7 519 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KLK4Q9Y5K2 254 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 NPTNQ9Y639 398 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 FNDC1Q4ZHG4 1894 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 TOGARAM1Q9Y4F4 1720 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 WDR81Q562E7 1941 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TNS3Q68CZ2 1445 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 LRP6O75581 1613 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MEIKINA0A087WXM9 373 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KIR2DL5BA0A0G2JN68 375 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KIR2DL5BA0A0G2JPC4 375 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 A0A1W2PPM1 405 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TRBC2A0A5B9 178 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR2A25A4D2G3 310 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLEC18AA5D8T8 446 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 LRIT2A6NDA9 550 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 IFITM10A6NMD0 228 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZNF726A6NNF4 738 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MYO1GB0I1T2 1018 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SEC14L6B5MCN3 397 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ANHXE9PGG2 379 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 HAS3O00219 553 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DFFAO00273 331 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PRRG1O14668 218 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CYB5BO43169 146 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZNF264O43296 627 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TGOLN2O43493 480 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TLX3O43711 291 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 TLX2O43763 284 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR2T1O43869 369 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 AIREO43918 545 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KIAA0513O60268 411 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TAF5LO75529 589 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RP2O75695 350 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLCO2B1O94956 709 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 STBD1O95210 358 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KCNK5O95279 499 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLIC3O95833 236 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 EGFP01133 1207 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MT-ND4LP03901 98 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CSTBP04080 98 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 BCHEP06276 602 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ITGA5P08648 1049 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLC35G4P0C7Q5 338 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 C1GALT1C1LP0DN25 315 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CALCBP10092 127 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 F3P13726 295 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 VEGFAP15692 232 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 ABOP16442 354 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 IL7RP16871 459 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ADCYAP1P18509 176 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TBPP20226 339 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 EFNA1P20827 205 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 SERPINA2P20848 420 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DRD5P21918 477 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FASP25445 335 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 IVDP26440 423 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PSMB9P28065 219 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 S100A7P31151 101 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SDC4P31431 198 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PTGER1P34995 402 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CYP2J2P51589 502 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CCR8P51685 355 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 JAK3P52333 1124 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLDN18P56856 261 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 LSM3P62310 102 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 YPEL5P62699 121 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DLK1P80370 383 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FKBP3Q00688 224 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 TLE2Q04725 743 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KRTAP1-1Q07627 177 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FOXM1Q08050 763 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TGM3Q08188 693 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CRYZQ08257 329 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLC10A7Q0GE19 358 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SREBF2Q12772 1141 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PLA2G7Q13093 441 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CDH18Q13634 790 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 GTF2H2Q13888 395 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DAZAP2Q15038 168 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 SIX1Q15475 284 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 FCN2Q15485 313 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TSTQ16762 297 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 IMPG1Q17R60 797 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FAM110CQ1W6H9 321 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 EXOC3L2Q2M3D2 409 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 GLYR1Q49A26 553 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 AGKQ53H12 422 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ARHGAP15Q53QZ3 475 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 C6orf141Q5SZD1 244 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 LRIF1Q5T3J3 769 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 HIST2H3PS2Q5TEC6 136 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TTC23Q5W5X9 447 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms